PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52301-52350 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 91.6667 | 85.1546 | 0 | 0 | 66 | 6 | 4 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | het | 78.0093 | 80.2817 | 75.8621 | 89.5558 | 57 | 14 | 66 | 21 | 11 | 52.3810 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.3084 | 66 | 3 | 66 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 66.7081 | 53.2787 | 89.1892 | 86.8093 | 65 | 57 | 66 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 84.7682 | 73.5632 | 100.0000 | 83.5821 | 64 | 23 | 66 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 73.0417 | 73.5632 | 72.5275 | 81.8363 | 64 | 23 | 66 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | homalt | 94.2857 | 89.1892 | 100.0000 | 22.3529 | 66 | 8 | 66 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.4348 | 66 | 3 | 66 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.5000 | 71.7391 | 97.0588 | 60.2339 | 66 | 26 | 66 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.7599 | 69.8795 | 98.5075 | 30.9278 | 58 | 25 | 66 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.3790 | 66 | 3 | 66 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 89.3142 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | tech_badpromoters | het | 91.6667 | 85.7143 | 98.5075 | 37.9630 | 66 | 11 | 66 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | tech_badpromoters | * | 94.9640 | 91.6667 | 98.5075 | 27.9570 | 66 | 6 | 66 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 74.9049 | 66 | 7 | 66 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7778 | 98.5075 | 97.0588 | 85.2495 | 66 | 1 | 66 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 86.4432 | 77.0115 | 98.5075 | 99.9051 | 67 | 20 | 66 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 91.3158 | 66 | 3 | 66 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 92.2535 | 66 | 3 | 66 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 44.1767 | 33.5366 | 64.7059 | 59.2000 | 55 | 109 | 66 | 36 | 29 | 80.5556 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.4348 | 66 | 3 | 66 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_siren | het | 96.7919 | 97.9592 | 95.6522 | 91.2548 | 48 | 1 | 66 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 70.9251 | 66 | 7 | 66 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.9646 | 67 | 0 | 66 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 89.8462 | 66 | 3 | 66 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2481 | 100.0000 | 98.5075 | 67.1569 | 68 | 0 | 66 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.9133 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3077 | 35.1064 | 53.2258 | 74.8988 | 66 | 122 | 66 | 58 | 49 | 84.4828 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.7458 | 92.9577 | 29.4643 | 46.0241 | 66 | 5 | 66 | 158 | 142 | 89.8734 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.2592 | 83.7329 | 86.8421 | 25.4902 | 489 | 95 | 66 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | * | 82.0089 | 74.1176 | 91.7808 | 87.5000 | 63 | 22 | 67 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.2298 | 81.7073 | 84.8101 | 93.6342 | 67 | 15 | 67 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | homalt | 81.9444 | 69.4118 | 100.0000 | 94.5573 | 59 | 26 | 67 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | * | 74.1899 | 72.3404 | 76.1364 | 88.0759 | 34 | 13 | 67 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.5401 | 41.8750 | 87.0130 | 90.2900 | 67 | 93 | 67 | 10 | 3 | 30.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | homalt | 83.7500 | 74.4444 | 95.7143 | 85.5372 | 67 | 23 | 67 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 90.3272 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9425 | 91.5612 | 94.3662 | 39.3162 | 217 | 20 | 67 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3848 | 95.6522 | 89.3333 | 91.3793 | 66 | 3 | 67 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3662 | 90.5405 | 98.5294 | 79.5181 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4444 | 94.3662 | 61.4679 | 54.5833 | 67 | 4 | 67 | 42 | 42 | 100.0000 | |