PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52001-52050 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.5382 | 68.9655 | 93.9394 | 75.0943 | 60 | 27 | 62 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | het | 71.4286 | 76.9231 | 66.6667 | 92.1980 | 60 | 18 | 62 | 31 | 14 | 45.1613 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 92.8230 | 86.6071 | 100.0000 | 66.1202 | 97 | 15 | 62 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.3537 | 73.8095 | 98.4127 | 62.2754 | 62 | 22 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 74.4856 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.6863 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 87.3494 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.1240 | 96.8750 | 95.3846 | 94.3674 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 86.9198 | 61 | 1 | 62 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 93.9394 | 95.6117 | 0 | 0 | 62 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 81.9484 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.8028 | 60.1852 | 95.3846 | 71.2389 | 65 | 43 | 62 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 84.5000 | 62 | 2 | 62 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 90.3226 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1240 | 93.9394 | 98.4127 | 96.2985 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1240 | 93.9394 | 98.4127 | 96.4286 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | het | 45.1091 | 32.1429 | 75.6098 | 90.5093 | 90 | 190 | 62 | 20 | 2 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | * | 57.7618 | 43.4555 | 86.1111 | 95.1968 | 83 | 108 | 62 | 10 | 1 | 10.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | het | 84.3537 | 96.8750 | 74.6988 | 93.2134 | 62 | 2 | 62 | 21 | 19 | 90.4762 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 27.5097 | 21.6216 | 37.8049 | 73.8854 | 48 | 174 | 62 | 102 | 48 | 47.0588 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | het | 88.3685 | 94.9153 | 82.6667 | 49.3243 | 56 | 3 | 62 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 29.4957 | 83.3333 | 17.9191 | 92.6664 | 55 | 11 | 62 | 284 | 5 | 1.7606 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | het | 85.5453 | 95.4545 | 77.5000 | 97.4202 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | het | 85.5453 | 95.4545 | 77.5000 | 97.4992 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 58.2160 | 41.0596 | 100.0000 | 66.4865 | 62 | 89 | 62 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 12.5633 | 8.8953 | 21.3793 | 49.9136 | 62 | 635 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 29.1765 | 45.9259 | 21.3793 | 49.5652 | 62 | 73 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6378 | 96.8750 | 98.4127 | 85.6818 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 91.4286 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3595 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4699 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | hetalt | 91.8519 | 86.1111 | 98.4127 | 77.2563 | 62 | 10 | 62 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6378 | 95.3846 | 100.0000 | 87.3727 | 62 | 3 | 62 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.8968 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.1892 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 85.9091 | 61 | 1 | 62 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.9024 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 71.2644 | 91.1765 | 99.9005 | 62 | 25 | 62 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 94.6565 | 93.9394 | 95.3846 | 96.6955 | 62 | 4 | 62 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 94.6565 | 93.9394 | 95.3846 | 96.8059 | 62 | 4 | 62 | 3 | 0 | 0.0000 | |