PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51651-51700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 75.6665 | 62.1622 | 96.6667 | 91.4651 | 23 | 14 | 58 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | hetalt | 50.2165 | 34.5238 | 92.0635 | 93.5910 | 29 | 55 | 58 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 21.0909 | 34.8341 | 0 | 1 | 58 | 217 | 181 | 83.4101 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | homalt | 78.0829 | 75.7576 | 80.5556 | 78.2477 | 25 | 8 | 58 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | homalt | 77.5608 | 75.7576 | 79.4521 | 78.2090 | 25 | 8 | 58 | 15 | 15 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.2353 | 100.0000 | 51.7857 | 95.9288 | 1 | 0 | 58 | 54 | 18 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | * | 80.6885 | 80.8219 | 80.5556 | 93.5252 | 59 | 14 | 58 | 14 | 10 | 71.4286 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.7433 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.9012 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 58.2734 | 58 | 34 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 31.7647 | 51 | 32 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.1011 | 67.8161 | 92.0635 | 99.9065 | 59 | 28 | 58 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 82.3708 | 58 | 2 | 58 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 87.2180 | 96.6667 | 79.4521 | 92.0131 | 58 | 2 | 58 | 15 | 2 | 13.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.6667 | 96.6667 | 96.6667 | 88.9908 | 58 | 2 | 58 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3386 | 84.0580 | 100.0000 | 56.0606 | 58 | 11 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 81.6456 | 58 | 2 | 58 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 75.0000 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.0635 | 98.3051 | 86.5672 | 75.1852 | 58 | 1 | 58 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 56.3910 | 58 | 34 | 58 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 27.5000 | 51 | 32 | 58 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4790 | 96.6667 | 98.3051 | 81.6770 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 40.5594 | 95.7390 | 0 | 0 | 58 | 85 | 9 | 10.5882 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | het | 89.9225 | 87.8788 | 92.0635 | 96.0427 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | het | 89.9225 | 87.8788 | 92.0635 | 96.1632 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.1132 | 30.9859 | 56.8627 | 26.6187 | 44 | 98 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.0929 | 41.6667 | 56.8627 | 26.6187 | 10 | 14 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | het | 77.8088 | 82.7586 | 73.4177 | 88.3136 | 24 | 5 | 58 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 92.7457 | 89.1304 | 96.6667 | 92.9742 | 41 | 5 | 58 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | * | 75.6398 | 67.9487 | 85.2941 | 98.9759 | 53 | 25 | 58 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 94.3089 | 89.2308 | 100.0000 | 87.9418 | 58 | 7 | 58 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 79.3814 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3386 | 84.0580 | 100.0000 | 55.3846 | 58 | 11 | 58 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3386 | 84.0580 | 100.0000 | 55.7252 | 58 | 11 | 58 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | het | 95.8678 | 95.0820 | 96.6667 | 88.7430 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 88.9706 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 91.1234 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 80.5281 | 59 | 1 | 59 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.4729 | 100.0000 | 84.2857 | 76.0274 | 59 | 0 | 59 | 11 | 11 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1597 | 100.0000 | 98.3333 | 64.0719 | 59 | 0 | 59 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.6895 | 59 | 1 | 59 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.8381 | 59 | 1 | 59 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | het | 77.8285 | 81.2500 | 74.6835 | 89.5641 | 52 | 12 | 59 | 20 | 11 | 55.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 12.3870 | 7.8603 | 29.2079 | 60.1578 | 54 | 633 | 59 | 143 | 46 | 32.1678 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.7788 | 59 | 1 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.9225 | 59 | 1 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 91.2449 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |