PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51551-51600 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.8881 | 71.6667 | 98.2759 | 94.5283 | 43 | 17 | 57 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 48.2456 | 58 | 1 | 57 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.4798 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.7151 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3746 | 94.5455 | 98.2759 | 71.1443 | 52 | 3 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 52.5000 | 59 | 0 | 57 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.4359 | 96.6102 | 98.2759 | 58.5714 | 57 | 2 | 57 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.2898 | 0.1456 | 32.5714 | 65.9533 | 1 | 686 | 57 | 118 | 47 | 39.8305 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 92.5888 | 88.8889 | 96.6102 | 92.8571 | 40 | 5 | 57 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | * | 80.5600 | 72.6027 | 90.4762 | 87.9771 | 53 | 20 | 57 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 60.0266 | 74.1071 | 50.4425 | 79.7491 | 83 | 29 | 57 | 56 | 18 | 32.1429 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 51.5722 | 36.5269 | 87.6923 | 81.3754 | 61 | 106 | 57 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.1461 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 94.2149 | 95.0000 | 93.4426 | 93.3041 | 57 | 3 | 57 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 49.7817 | 100.0000 | 33.1395 | 82.4847 | 1 | 0 | 57 | 115 | 16 | 13.9130 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 41.0072 | 95.7686 | 0 | 0 | 57 | 82 | 9 | 10.9756 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6937 | 88.1356 | 100.0000 | 73.7327 | 52 | 7 | 57 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 94.2149 | 89.0625 | 100.0000 | 87.5546 | 57 | 7 | 57 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.3529 | 57 | 3 | 57 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.8169 | 30.4348 | 43.5115 | 29.1892 | 49 | 112 | 57 | 74 | 60 | 81.0811 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | * | 80.4282 | 79.4521 | 81.4286 | 91.4005 | 58 | 15 | 57 | 13 | 8 | 61.5385 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 35.0904 | 39.3443 | 31.6667 | 53.3679 | 48 | 74 | 57 | 123 | 84 | 68.2927 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 94.3580 | 57 | 0 | 57 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.0379 | 87.8788 | 96.6102 | 82.6471 | 58 | 8 | 57 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 78.7004 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.9937 | 57 | 3 | 57 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 94.1418 | 57 | 3 | 57 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6937 | 88.1356 | 100.0000 | 73.3645 | 52 | 7 | 57 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.8678 | 95.0820 | 96.6667 | 89.2665 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 89.5105 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 76.1488 | 75.0000 | 77.3333 | 99.5926 | 15 | 5 | 58 | 17 | 14 | 82.3529 | |
| ckim-isaac | INDEL | D1_5 | map_siren | hetalt | 78.6581 | 67.8571 | 93.5484 | 87.0293 | 57 | 27 | 58 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | het | 60.8031 | 45.0382 | 93.5484 | 89.8527 | 59 | 72 | 58 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | het | 60.2597 | 44.4444 | 93.5484 | 90.0000 | 60 | 75 | 58 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | het | 99.1453 | 100.0000 | 98.3051 | 41.0000 | 59 | 0 | 58 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.5179 | 74.0741 | 90.6250 | 67.6768 | 60 | 21 | 58 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.0635 | 85.2941 | 100.0000 | 55.3846 | 58 | 10 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 79.8658 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.9565 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.1014 | 58 | 2 | 58 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 82.3529 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.6995 | 90.9091 | 96.6667 | 89.9833 | 60 | 6 | 58 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | het | 96.6667 | 95.0820 | 98.3051 | 92.1333 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | het | 96.6667 | 95.0820 | 98.3051 | 92.3177 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |