PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51301-51350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 73.9130 | 51 | 8 | 54 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 87.6957 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 89.2562 | 91.5254 | 87.0968 | 90.7186 | 54 | 5 | 54 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.6774 | 79.4118 | 62.0690 | 95.4946 | 54 | 14 | 54 | 33 | 3 | 9.0909 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.8049 | 78.2609 | 100.0000 | 58.7786 | 54 | 15 | 54 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1481 | 96.3636 | 100.0000 | 63.2653 | 53 | 2 | 54 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 86.9048 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 87.2093 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.4386 | 55 | 2 | 54 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.7368 | 94.7368 | 94.7368 | 99.4664 | 54 | 3 | 54 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 23.9437 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7563 | 90.0000 | 91.5254 | 96.8177 | 54 | 6 | 54 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 41.1414 | 67.0732 | 29.6703 | 62.4742 | 55 | 27 | 54 | 128 | 119 | 92.9688 | |
| ciseli-custom | INDEL | I6_15 | segdup | * | 43.2432 | 32.0000 | 66.6667 | 89.6021 | 56 | 119 | 54 | 27 | 25 | 92.5926 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | homalt | 93.9130 | 94.7368 | 93.1034 | 92.6582 | 54 | 3 | 54 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 40.3615 | 29.2553 | 65.0602 | 70.8772 | 55 | 133 | 54 | 29 | 19 | 65.5172 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 73.0717 | 83.3333 | 65.0602 | 84.3396 | 55 | 11 | 54 | 29 | 28 | 96.5517 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9787 | 82.6087 | 79.4118 | 94.2422 | 57 | 12 | 54 | 14 | 3 | 21.4286 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 59.4318 | 53.0864 | 67.5000 | 54.5455 | 43 | 38 | 54 | 26 | 25 | 96.1538 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 37.3854 | 26.5403 | 63.2184 | 72.2930 | 56 | 155 | 55 | 32 | 21 | 65.6250 | |
| gduggal-snapvard | INDEL | * | tech_badpromoters | * | 57.9096 | 53.9474 | 62.5000 | 60.5381 | 41 | 35 | 55 | 33 | 24 | 72.7273 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 10.6178 | 83.3333 | 5.6701 | 81.1174 | 55 | 11 | 55 | 915 | 8 | 0.8743 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.1944 | 52.8736 | 64.7059 | 67.8030 | 46 | 41 | 55 | 30 | 29 | 96.6667 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 59.7826 | 94.1289 | 0 | 0 | 55 | 37 | 4 | 10.8108 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 46.6102 | 95.3025 | 0 | 0 | 55 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.0905 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 16.8906 | 9.3023 | 91.6667 | 74.3590 | 56 | 546 | 55 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.3662 | 31.0680 | 41.0448 | 83.2080 | 64 | 142 | 55 | 79 | 42 | 53.1646 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.9688 | 47.5410 | 93.2203 | 73.6607 | 58 | 64 | 55 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.6782 | 55 | 2 | 55 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 24.0700 | 40.7407 | 17.0807 | 46.4226 | 55 | 80 | 55 | 267 | 265 | 99.2509 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.7097 | 79.7101 | 100.0000 | 53.3898 | 55 | 14 | 55 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.4501 | 55 | 2 | 55 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.9091 | 91.6667 | 90.1639 | 98.1015 | 55 | 5 | 55 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1367 | 91.6667 | 69.6203 | 89.0733 | 55 | 5 | 55 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | het | 91.6667 | 93.2203 | 90.1639 | 47.4138 | 55 | 4 | 55 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.5609 | 0 | 0 | 55 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.4309 | 80.8824 | 100.0000 | 97.0478 | 55 | 13 | 55 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | * | 94.0171 | 94.8276 | 93.2203 | 95.0545 | 55 | 3 | 55 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 90.1639 | 91.6667 | 88.7097 | 95.3662 | 55 | 5 | 55 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 83.4320 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 83.7681 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.7097 | 80.8824 | 98.2143 | 96.7098 | 55 | 13 | 55 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | * | 94.8276 | 94.8276 | 94.8276 | 93.6819 | 55 | 3 | 55 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.6154 | 84.6154 | 84.6154 | 87.3047 | 55 | 10 | 55 | 10 | 10 | 100.0000 | |