PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51151-51200 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 86.2338 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 24.6377 | 49 | 2 | 52 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.6792 | 79.6610 | 100.0000 | 71.7391 | 47 | 12 | 52 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.2264 | 92.7273 | 100.0000 | 63.8889 | 51 | 4 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 94.9219 | 51 | 1 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 72.3404 | 49 | 10 | 52 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2500 | 73.2394 | 91.2281 | 63.4615 | 52 | 19 | 52 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7887 | 26.4368 | 60.4651 | 99.9570 | 23 | 64 | 52 | 34 | 23 | 67.6471 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.7831 | 52 | 8 | 52 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 80.0000 | 88.1356 | 73.2394 | 89.4659 | 52 | 7 | 52 | 19 | 15 | 78.9474 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 47.6817 | 34.6405 | 76.4706 | 72.3577 | 53 | 100 | 52 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | het | 85.0531 | 79.6610 | 91.2281 | 72.1951 | 47 | 12 | 52 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 37.9562 | 27.0833 | 63.4146 | 40.5797 | 52 | 140 | 52 | 30 | 24 | 80.0000 | |
| astatham-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5631 | 51 | 1 | 52 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.6937 | 91.2281 | 96.2963 | 99.4858 | 52 | 5 | 52 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6266 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4781 | 92.7273 | 96.2963 | 63.5135 | 51 | 4 | 52 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0476 | 98.1132 | 100.0000 | 76.0369 | 52 | 1 | 52 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.2425 | 51 | 1 | 52 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | het | 81.4578 | 81.6667 | 81.2500 | 89.3155 | 49 | 11 | 52 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.7498 | 74.6269 | 92.8571 | 85.4167 | 50 | 17 | 52 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 15.5475 | 9.5361 | 42.0635 | 45.6897 | 37 | 351 | 53 | 73 | 43 | 58.9041 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.6429 | 92.9825 | 96.3636 | 99.4786 | 53 | 4 | 53 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.4630 | 53 | 0 | 53 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.9147 | 52 | 0 | 53 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.7021 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 24.2857 | 50 | 1 | 53 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 56.3830 | 94.8996 | 0 | 0 | 53 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 55.7895 | 95.3086 | 0 | 0 | 53 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 61.5021 | 60.6742 | 62.3529 | 71.9472 | 54 | 35 | 53 | 32 | 22 | 68.7500 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | hetalt | 69.7368 | 53.5354 | 100.0000 | 90.6028 | 53 | 46 | 53 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 40.1515 | 25.7282 | 91.3793 | 89.3186 | 53 | 153 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7563 | 93.4783 | 98.1481 | 89.2000 | 43 | 3 | 53 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.6988 | 47.5728 | 96.3636 | 56.6929 | 98 | 108 | 53 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_siren | * | 61.0410 | 60.4651 | 61.6279 | 85.1724 | 52 | 34 | 53 | 33 | 20 | 60.6061 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | * | 78.9185 | 70.3704 | 89.8305 | 86.2471 | 19 | 8 | 53 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.5515 | 69.4611 | 82.8125 | 75.1938 | 116 | 51 | 53 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9825 | 86.8852 | 100.0000 | 58.9147 | 53 | 8 | 53 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 96.3636 | 96.2737 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 96.3636 | 96.2737 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.5760 | 53 | 0 | 53 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 72.5389 | 50 | 9 | 53 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 89.0756 | 88.3333 | 89.8305 | 97.1036 | 53 | 7 | 53 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 67.0807 | 53 | 0 | 53 | 0 | 0 | ||