PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51101-51150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 76.1194 | 94.5395 | 0 | 0 | 51 | 16 | 12 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 82.9268 | 82.2581 | 83.6066 | 84.9383 | 51 | 11 | 51 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | het | 83.6066 | 96.2264 | 73.9130 | 98.5907 | 51 | 2 | 51 | 18 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.0541 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.4679 | 70.6667 | 70.2703 | 56.2130 | 53 | 22 | 52 | 22 | 19 | 86.3636 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 72.8872 | 59.3023 | 94.5455 | 73.4300 | 51 | 35 | 52 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.3091 | 73.9130 | 92.8571 | 85.9649 | 51 | 18 | 52 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 74.6483 | 60.2410 | 98.1132 | 32.9114 | 50 | 33 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.1132 | 95.6414 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | het | 95.5752 | 91.5254 | 100.0000 | 78.2427 | 54 | 5 | 52 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | * | 83.1087 | 87.9310 | 78.7879 | 94.7577 | 51 | 7 | 52 | 14 | 7 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 98.1132 | 91.7574 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 96.0426 | 51 | 1 | 52 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5932 | 51 | 1 | 52 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.7196 | 81.3559 | 100.0000 | 72.0430 | 48 | 11 | 52 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | het | 91.0871 | 85.0000 | 98.1132 | 91.4239 | 51 | 9 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 65.1007 | 48 | 4 | 52 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7049 | 91.5254 | 98.1132 | 74.6411 | 54 | 5 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 98.1132 | 91.5335 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.2459 | 96.6703 | 0 | 0 | 52 | 9 | 3 | 33.3333 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | homalt | 59.4286 | 47.7064 | 78.7879 | 96.7977 | 52 | 57 | 52 | 14 | 8 | 57.1429 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 12.6208 | 7.7147 | 34.6667 | 87.4161 | 53 | 634 | 52 | 98 | 77 | 78.5714 | |
| ckim-dragen | INDEL | * | map_l250_m0_e0 | het | 90.4348 | 98.1132 | 83.8710 | 97.8344 | 52 | 1 | 52 | 10 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | * | 75.9124 | 61.1765 | 100.0000 | 96.6858 | 52 | 33 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 62.6506 | 45.6140 | 100.0000 | 93.7274 | 52 | 62 | 52 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 61.7761 | 44.6927 | 100.0000 | 30.6667 | 80 | 99 | 52 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | het | 92.0354 | 86.6667 | 98.1132 | 96.1398 | 52 | 8 | 52 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 89.1213 | 0 | 0 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 92.3865 | 54 | 3 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.2114 | 63.1579 | 40.3101 | 83.2031 | 60 | 35 | 52 | 77 | 41 | 53.2468 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | het | 78.7879 | 66.6667 | 96.2963 | 95.7447 | 52 | 26 | 52 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | het | 59.7701 | 42.6230 | 100.0000 | 98.9735 | 52 | 70 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.4676 | 51.9231 | 96.2963 | 59.0909 | 27 | 25 | 52 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6007 | 51 | 1 | 52 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | het | 92.8571 | 98.1132 | 88.1356 | 97.2861 | 52 | 1 | 52 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 74.3842 | 49 | 10 | 52 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 59.6899 | 51 | 1 | 52 | 0 | 0 | ||