PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50851-50900 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 89.3162 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 90.7308 | 50 | 0 | 48 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | * | 98.9691 | 100.0000 | 97.9592 | 95.9098 | 47 | 0 | 48 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 10.5727 | 87.5855 | 0 | 0 | 48 | 406 | 22 | 5.4187 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 24.8705 | 87.2439 | 0 | 0 | 48 | 145 | 9 | 6.2069 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 4.1479 | 2.2831 | 22.6415 | 66.0800 | 20 | 856 | 48 | 164 | 113 | 68.9024 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | * | 80.9978 | 79.3103 | 82.7586 | 95.3226 | 46 | 12 | 48 | 10 | 8 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 82.0513 | 73.8462 | 92.3077 | 88.7931 | 48 | 17 | 48 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.9391 | 31.0680 | 18.1818 | 56.7921 | 64 | 142 | 48 | 216 | 4 | 1.8519 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.7807 | 42 | 18 | 48 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.3529 | 70.0000 | 100.0000 | 96.8545 | 42 | 18 | 48 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.9558 | 90.5660 | 80.0000 | 72.3502 | 48 | 5 | 48 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 78.5083 | 73.5294 | 84.2105 | 64.3750 | 50 | 18 | 48 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 44.5455 | 96.0686 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 44.5455 | 96.1417 | 0 | 0 | 49 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 27.3743 | 59.8655 | 0 | 168 | 49 | 130 | 40 | 30.7692 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 17.5627 | 9.9796 | 73.1343 | 69.4064 | 49 | 442 | 49 | 18 | 14 | 77.7778 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | * | 38.8774 | 25.3788 | 83.0508 | 94.3378 | 67 | 197 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | * | 37.6750 | 24.3636 | 83.0508 | 94.4076 | 67 | 208 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 19.2946 | 18.8525 | 19.7581 | 78.5095 | 92 | 396 | 49 | 199 | 5 | 2.5126 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | * | 42.6472 | 30.2857 | 72.0588 | 94.2761 | 53 | 122 | 49 | 19 | 2 | 10.5263 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 81.6667 | 73.1343 | 92.4528 | 88.7712 | 49 | 18 | 49 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | het | 83.1683 | 71.1864 | 100.0000 | 81.5094 | 42 | 17 | 49 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | het | 94.0849 | 93.9394 | 94.2308 | 96.2509 | 31 | 2 | 49 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | func_cds | het | 90.7407 | 83.0508 | 100.0000 | 62.8788 | 49 | 10 | 49 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.9825 | 27.3743 | 100.0000 | 60.1626 | 49 | 130 | 49 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 49.0051 | 33.5664 | 90.7407 | 98.6432 | 48 | 95 | 49 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.7486 | 39.5161 | 89.0909 | 97.3583 | 49 | 75 | 49 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | * | 77.1296 | 68.0000 | 89.0909 | 85.2151 | 17 | 8 | 49 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4979 | 2 | 0 | 49 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.3042 | 49 | 4 | 49 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 73.0769 | 51 | 1 | 49 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 90.6310 | 49 | 1 | 49 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | het | 84.4828 | 92.4528 | 77.7778 | 98.7390 | 49 | 4 | 49 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.0909 | 80.3279 | 100.0000 | 51.0000 | 49 | 12 | 49 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.2500 | 48 | 4 | 49 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5094 | 49 | 0 | 49 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l250_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 98.3513 | 49 | 4 | 49 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.3125 | 51.5464 | 67.1233 | 96.0879 | 50 | 47 | 49 | 24 | 21 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.7778 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 98.0000 | 96.0784 | 100.0000 | 92.0195 | 49 | 2 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 92.1348 | 49 | 1 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1538 | 49 | 0 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |