PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50601-50650 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 92.5040 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.8421 | 100.0000 | 93.8776 | 94.8905 | 46 | 0 | 46 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I6_15 | segdup | homalt | 97.8723 | 97.8723 | 97.8723 | 92.5750 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.8454 | 97.8723 | 92.0000 | 50.9804 | 46 | 1 | 46 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1730 | 45 | 3 | 46 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.2524 | 92.1569 | 79.3103 | 96.2435 | 47 | 4 | 46 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 92.0000 | 97.8723 | 86.7925 | 95.0789 | 46 | 1 | 46 | 7 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.3204 | 80.7018 | 100.0000 | 99.3925 | 46 | 11 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 90.7631 | 46 | 1 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9247 | 97.8723 | 100.0000 | 90.9091 | 46 | 1 | 46 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | het | 94.8454 | 93.8776 | 95.8333 | 88.5442 | 46 | 3 | 46 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.4455 | 45 | 3 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8723 | 97.8723 | 97.8723 | 93.1785 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.7900 | 46 | 0 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 91.6961 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.9813 | 75.4098 | 100.0000 | 55.3398 | 46 | 15 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.8723 | 97.8723 | 97.8723 | 51.5464 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | het | 74.1935 | 69.6970 | 79.3103 | 98.6878 | 46 | 20 | 46 | 12 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | het | 74.1935 | 69.6970 | 79.3103 | 98.7342 | 46 | 20 | 46 | 12 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 43.8095 | 95.8167 | 0 | 0 | 46 | 59 | 5 | 8.4746 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.9813 | 97.8723 | 76.6667 | 94.5946 | 46 | 1 | 46 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.8333 | 46 | 18 | 46 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | * | 93.8776 | 100.0000 | 88.4615 | 97.3537 | 46 | 0 | 46 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.8667 | 46 | 1 | 46 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8540 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4229 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.7598 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 91.2381 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.0484 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1889 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 92.8349 | 46 | 1 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.8949 | 94.1176 | 80.7018 | 96.1039 | 48 | 3 | 46 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 26.9841 | 46 | 3 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 92.9293 | 100.0000 | 86.7925 | 97.3827 | 46 | 0 | 46 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.9394 | 46 | 1 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.9547 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4961 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8718 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.6190 | 92.0000 | 83.6364 | 85.0949 | 46 | 4 | 46 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3419 | 88.6792 | 73.4375 | 98.2773 | 47 | 6 | 47 | 17 | 1 | 5.8824 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.1284 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.2056 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.9581 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9459 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |