PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50351-50400 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 96.7033 | 95.6522 | 97.7778 | 95.1246 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.3481 | 95.8333 | 78.5714 | 95.8854 | 46 | 2 | 44 | 12 | 4 | 33.3333 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7269 | 97.8261 | 95.6522 | 94.5691 | 45 | 1 | 44 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.9561 | 46 | 1 | 44 | 0 | 0 | ||
| cchapple-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 77.1930 | 96.7558 | 0 | 0 | 44 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9238 | 72.7273 | 86.2745 | 96.2583 | 32 | 12 | 44 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | het | 96.7033 | 100.0000 | 93.6170 | 95.2090 | 37 | 0 | 44 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 94.6237 | 95.6522 | 93.6170 | 97.1567 | 44 | 2 | 44 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.3696 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | homalt | 57.5163 | 40.3670 | 100.0000 | 93.4621 | 44 | 65 | 44 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 94.3305 | 44 | 1 | 44 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.2421 | 44 | 1 | 44 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 96.7606 | 46 | 2 | 44 | 10 | 4 | 40.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 30.7692 | 61.9718 | 20.4651 | 43.1217 | 44 | 27 | 44 | 171 | 145 | 84.7953 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 45.5959 | 38.9381 | 55.0000 | 97.4367 | 44 | 69 | 44 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | D6_15 | segdup | homalt | 75.0000 | 90.0000 | 64.2857 | 93.2757 | 45 | 5 | 45 | 25 | 24 | 96.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 46.1538 | 39.4737 | 55.5556 | 97.4782 | 45 | 69 | 45 | 36 | 27 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 53.6082 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2134 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.5687 | 91.4894 | 95.7447 | 81.3492 | 43 | 4 | 45 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 83.7456 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.1696 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 68.9655 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 21.0526 | 45 | 4 | 45 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 84.1379 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 94.3529 | 45 | 1 | 45 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 80.3571 | 67.1642 | 100.0000 | 88.2199 | 45 | 22 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | het | 77.5862 | 63.3803 | 100.0000 | 96.9940 | 45 | 26 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | het | 77.5862 | 63.3803 | 100.0000 | 97.0646 | 45 | 26 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 92.3967 | 45 | 5 | 45 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 84.1121 | 72.5806 | 100.0000 | 90.6832 | 45 | 17 | 45 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.4938 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.9558 | 73.8462 | 100.0000 | 80.6034 | 48 | 17 | 45 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 83.4783 | 71.6418 | 100.0000 | 81.0924 | 48 | 19 | 45 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 93.7500 | 96.1290 | 0 | 0 | 45 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | het | 53.8274 | 51.6049 | 56.2500 | 59.7990 | 209 | 196 | 45 | 35 | 35 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | homalt | 71.4286 | 90.0000 | 59.2105 | 90.9524 | 45 | 5 | 45 | 31 | 30 | 96.7742 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | hetalt | 21.9016 | 12.5373 | 86.5385 | 70.1149 | 42 | 293 | 45 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | homalt | 55.9006 | 38.7931 | 100.0000 | 98.0358 | 45 | 71 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.7562 | 62.1622 | 93.7500 | 89.5879 | 46 | 28 | 45 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | het | 57.6923 | 40.5405 | 100.0000 | 98.9752 | 45 | 66 | 45 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 65.6489 | 45 | 0 | 45 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 90.0000 | 97.8261 | 83.3333 | 98.2813 | 45 | 1 | 45 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.8261 | 100.0000 | 95.7447 | 83.3333 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |