PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50301-50350 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 80.7339 | 67.6923 | 100.0000 | 88.0759 | 44 | 21 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | * | 75.2137 | 60.2740 | 100.0000 | 96.7953 | 44 | 29 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_siren | hetalt | 75.8621 | 61.1111 | 100.0000 | 87.2093 | 44 | 28 | 44 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | homalt | 37.1308 | 22.7979 | 100.0000 | 98.3841 | 44 | 149 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 89.0000 | 43 | 5 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 86.2745 | 77.1930 | 97.7778 | 99.5198 | 44 | 13 | 44 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.7778 | 95.6522 | 100.0000 | 91.0751 | 44 | 2 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 88.8889 | 83.0189 | 95.6522 | 89.6861 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 88.8889 | 83.0189 | 95.6522 | 89.9563 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 87.3563 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 89.7959 | 97.7778 | 23.7288 | 44 | 5 | 44 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.1786 | 44 | 5 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | het | 92.6316 | 89.7959 | 95.6522 | 77.1144 | 44 | 5 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0378 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 96.7407 | 44 | 4 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0000 | 83.0189 | 93.6170 | 90.5242 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0000 | 83.0189 | 93.6170 | 90.8382 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.4231 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 60.3604 | 44 | 1 | 44 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 95.4457 | 44 | 1 | 44 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.9880 | 44 | 0 | 44 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3805 | 89.3617 | 97.7778 | 82.0000 | 42 | 5 | 44 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8764 | 100.0000 | 97.7778 | 94.4853 | 44 | 0 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | * | 55.3459 | 38.5965 | 97.7778 | 90.5462 | 44 | 70 | 44 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.3791 | 93.4783 | 78.5714 | 87.6923 | 43 | 3 | 44 | 12 | 10 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.5492 | 69.5652 | 95.6522 | 68.7075 | 48 | 21 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.5245 | 91.4894 | 95.6522 | 92.2166 | 43 | 4 | 44 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 67.3913 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 70.0000 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4555 | 44 | 5 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0749 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.3720 | 44 | 5 | 44 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.0415 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8383 | 44 | 1 | 44 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.8503 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.2421 | 44 | 1 | 44 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 57.5634 | 52.4590 | 63.7681 | 43.4426 | 32 | 29 | 44 | 25 | 20 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | homalt | 35.7724 | 100.0000 | 21.7822 | 38.4146 | 3 | 0 | 44 | 158 | 97 | 61.3924 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 96.7033 | 93.6170 | 100.0000 | 91.0020 | 44 | 3 | 44 | 0 | 0 | ||