PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50251-50300 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.4000 | 64.7059 | 77.1930 | 96.8784 | 44 | 24 | 44 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.8761 | 63.7681 | 100.0000 | 58.0952 | 44 | 25 | 44 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8889 | 97.7778 | 81.4815 | 79.3103 | 44 | 1 | 44 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.5858 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.2965 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 90.0227 | 44 | 1 | 44 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | homalt | 96.7033 | 93.6170 | 100.0000 | 91.7137 | 44 | 3 | 44 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 45.6790 | 44 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.9474 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.8442 | 86.3636 | 93.6170 | 94.7486 | 57 | 9 | 44 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | tech_badpromoters | het | 97.7778 | 100.0000 | 95.6522 | 48.8889 | 44 | 0 | 44 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 91.8969 | 0 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | * | 96.7033 | 93.6170 | 100.0000 | 89.6471 | 44 | 3 | 44 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9011 | 97.8261 | 100.0000 | 87.6056 | 45 | 1 | 44 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.9254 | 90.1961 | 91.6667 | 94.4380 | 46 | 5 | 44 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 93.6170 | 95.6522 | 91.6667 | 97.1049 | 44 | 2 | 44 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 81.5126 | 44 | 1 | 44 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.3237 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.1287 | 95.6522 | 80.0000 | 92.8664 | 44 | 2 | 44 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.4369 | 93.6170 | 78.5714 | 92.8844 | 44 | 3 | 44 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.5762 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 25.4237 | 44 | 5 | 44 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0484 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 13.3942 | 7.1895 | 97.7778 | 42.3077 | 11 | 142 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | het | 83.1533 | 76.0870 | 91.6667 | 83.2168 | 35 | 11 | 44 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 97.1095 | 44 | 1 | 44 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | * | 3.4436 | 1.7941 | 42.7184 | 52.9680 | 42 | 2299 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | het | 7.2324 | 3.9506 | 42.7184 | 52.9680 | 16 | 389 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.9704 | 41.0714 | 74.5763 | 89.3694 | 46 | 66 | 44 | 15 | 4 | 26.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.9677 | 91.6667 | 57.8947 | 95.2970 | 44 | 4 | 44 | 32 | 22 | 68.7500 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 38.7893 | 24.1935 | 97.7778 | 41.5584 | 45 | 141 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | het | 92.6316 | 100.0000 | 86.2745 | 57.1429 | 44 | 0 | 44 | 7 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.8474 | 87.5000 | 47.8261 | 93.3765 | 42 | 6 | 44 | 48 | 20 | 41.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | * | 73.9496 | 95.6522 | 60.2740 | 97.1350 | 44 | 2 | 44 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.6847 | 73.4375 | 100.0000 | 79.9087 | 47 | 17 | 44 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | * | 92.4000 | 89.3617 | 95.6522 | 92.1098 | 42 | 5 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 85.6957 | 76.2712 | 97.7778 | 48.8636 | 45 | 14 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | homalt | 96.7033 | 93.6170 | 100.0000 | 90.2870 | 44 | 3 | 44 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 93.6170 | 95.7619 | 0 | 0 | 44 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8454 | 0 | 0 | 44 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 57.1429 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 41.7062 | 26.8293 | 93.6170 | 94.3914 | 44 | 120 | 44 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |