PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50201-50250 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.8316 | 43 | 4 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.7328 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 94.6776 | 44 | 2 | 43 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.8898 | 43 | 4 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 53.7634 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 76.6304 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.6318 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.7619 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1376 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 29.5082 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 44.1558 | 43 | 1 | 43 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 46.2500 | 43 | 1 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.7079 | 93.7500 | 86.0000 | 94.7917 | 45 | 3 | 43 | 7 | 2 | 28.5714 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 92.6316 | 86.2745 | 100.0000 | 91.1290 | 44 | 7 | 44 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.0189 | 95.6522 | 73.3333 | 97.9784 | 44 | 2 | 44 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.7033 | 100.0000 | 93.6170 | 94.0806 | 44 | 0 | 44 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | ti | tech_badpromoters | het | 96.7033 | 100.0000 | 93.6170 | 48.9130 | 44 | 0 | 44 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.4097 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | * | 89.7959 | 83.0189 | 97.7778 | 90.5263 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | * | 89.7959 | 83.0189 | 97.7778 | 91.7279 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | * | 89.7959 | 83.0189 | 97.7778 | 91.9643 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8148 | 44 | 1 | 44 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 90.2655 | 43 | 5 | 44 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 92.9339 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.6956 | 44 | 1 | 44 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.8757 | 95.8333 | 84.6154 | 94.4622 | 46 | 2 | 44 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m0_e0 | * | 96.7033 | 95.6522 | 97.7778 | 96.2993 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 95.2590 | 46 | 2 | 44 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.3526 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5691 | 68.1159 | 95.6522 | 67.8322 | 47 | 22 | 44 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.5358 | 97.4359 | 95.6522 | 91.9298 | 38 | 1 | 44 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.3291 | 0 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.8764 | 97.7778 | 100.0000 | 93.0599 | 44 | 1 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5058 | 45 | 0 | 44 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | * | 67.3310 | 58.9041 | 78.5714 | 86.1728 | 43 | 30 | 44 | 12 | 8 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.6170 | 97.7778 | 89.7959 | 82.5000 | 44 | 1 | 44 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | homalt | 96.7505 | 95.7447 | 97.7778 | 90.9820 | 45 | 2 | 44 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.2168 | 80.4348 | 80.0000 | 57.3643 | 37 | 9 | 44 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | het | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 44 | 0 | 44 | 2 | 0 | 0.0000 | |