PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50051-50100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | * | 91.4894 | 93.4783 | 89.5833 | 97.2650 | 43 | 3 | 43 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 96.7742 | 43 | 1 | 43 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 38.1445 | 26.9663 | 65.1515 | 73.2794 | 48 | 130 | 43 | 23 | 4 | 17.3913 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.0909 | 69.3548 | 97.6108 | 43 | 67 | 43 | 19 | 8 | 42.1053 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | * | 62.0192 | 60.0000 | 64.1791 | 85.8351 | 9 | 6 | 43 | 24 | 16 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | * | 62.2963 | 74.0741 | 53.7500 | 88.5057 | 20 | 7 | 43 | 37 | 29 | 78.3784 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.6879 | 91.8919 | 95.5556 | 85.9375 | 68 | 6 | 43 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | * | 94.5055 | 93.4783 | 95.5556 | 97.5179 | 43 | 3 | 43 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.3672 | 73.6842 | 86.0000 | 99.4308 | 42 | 15 | 43 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | * | 58.4466 | 46.6667 | 78.1818 | 86.7150 | 42 | 48 | 43 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | homalt | 81.4394 | 83.3333 | 79.6296 | 89.0909 | 30 | 6 | 43 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | homalt | 81.6539 | 83.7838 | 79.6296 | 89.2644 | 31 | 6 | 43 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 59.7222 | 96.2284 | 0 | 0 | 43 | 29 | 12 | 41.3793 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | homalt | 82.6923 | 91.4894 | 75.4386 | 87.6356 | 43 | 4 | 43 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 3 | 0 | 43 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | tech_badpromoters | het | 80.3738 | 100.0000 | 67.1875 | 68.6275 | 44 | 0 | 43 | 21 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.3738 | 67.1875 | 100.0000 | 87.6081 | 43 | 21 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 64.1221 | 47.1910 | 100.0000 | 79.8122 | 42 | 47 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.2540 | 52.4390 | 97.7273 | 85.7605 | 43 | 39 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | * | 55.1282 | 38.0531 | 100.0000 | 99.0247 | 43 | 70 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_siren | het | 68.1638 | 85.7143 | 56.5789 | 85.0099 | 42 | 7 | 43 | 33 | 20 | 60.6061 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.7273 | 96.1027 | 0 | 0 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 46.9136 | 44 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 90.5702 | 42 | 7 | 43 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.0693 | 43 | 2 | 43 | 0 | 0 | ||
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 46.9136 | 43 | 1 | 43 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.1223 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 90.3226 | 82.3529 | 100.0000 | 92.0074 | 42 | 9 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.0000 | 43 | 0 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 77.0833 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.8898 | 43 | 6 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2085 | 43 | 1 | 43 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.7862 | 43 | 2 | 43 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 89.3838 | 82.3529 | 97.7273 | 91.6667 | 42 | 9 | 43 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 76.5027 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.0988 | 88.8889 | 97.7273 | 93.3333 | 40 | 5 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 91.0788 | 44 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.5556 | 95.5556 | 95.5556 | 77.2727 | 43 | 2 | 43 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 44.1558 | 43 | 1 | 43 | 0 | 0 | ||