PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4751-4800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 77.6749 | 97.5930 | 64.5091 | 70.4237 | 892 | 22 | 887 | 488 | 1 | 0.2049 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | het | 60.2121 | 53.7913 | 68.3733 | 93.6004 | 1057 | 908 | 1055 | 488 | 21 | 4.3033 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2920 | 98.4666 | 96.1450 | 64.1784 | 12329 | 192 | 12171 | 488 | 413 | 84.6311 | |
| dgrover-gatk | INDEL | I1_5 | * | * | 99.5294 | 99.3841 | 99.6753 | 59.0782 | 149736 | 928 | 149786 | 488 | 385 | 78.8934 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | * | 99.3579 | 99.3895 | 99.3263 | 63.6563 | 71961 | 442 | 71950 | 488 | 23 | 4.7131 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.5573 | 99.8218 | 95.3932 | 57.7564 | 10084 | 18 | 10105 | 488 | 257 | 52.6639 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | * | 97.7706 | 97.1809 | 98.3675 | 76.0737 | 29405 | 853 | 29405 | 488 | 165 | 33.8115 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | het | 92.2213 | 98.3712 | 86.7950 | 94.0302 | 3201 | 53 | 3201 | 487 | 40 | 8.2136 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | het | 97.5203 | 98.7579 | 96.3134 | 81.5763 | 12721 | 160 | 12723 | 487 | 52 | 10.6776 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | * | 98.6576 | 99.2817 | 98.0414 | 69.3325 | 24325 | 176 | 24328 | 486 | 45 | 9.2593 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | * | 96.3944 | 97.1220 | 95.6777 | 73.2738 | 10765 | 319 | 10758 | 486 | 83 | 17.0782 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | het | 95.4613 | 97.4522 | 93.5501 | 77.1681 | 7038 | 184 | 7049 | 486 | 83 | 17.0782 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9489 | 97.2165 | 98.6923 | 51.4779 | 36847 | 1055 | 36679 | 486 | 451 | 92.7984 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.4202 | 43.0804 | 60.7748 | 52.4011 | 772 | 1020 | 753 | 486 | 332 | 68.3128 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | het | 97.8863 | 98.0978 | 97.6758 | 52.4481 | 20370 | 395 | 20424 | 486 | 392 | 80.6584 | |
| qzeng-custom | SNP | * | HG002complexvar | homalt | 99.2256 | 98.6350 | 99.8233 | 20.2251 | 284636 | 3939 | 274538 | 486 | 380 | 78.1893 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.4663 | 98.5411 | 85.3394 | 78.6638 | 2972 | 44 | 2829 | 486 | 15 | 3.0864 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.5589 | 88.9822 | 78.7587 | 90.6848 | 1801 | 223 | 1802 | 486 | 14 | 2.8807 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | het | 99.2217 | 99.5084 | 98.9366 | 68.7750 | 45136 | 223 | 45125 | 485 | 63 | 12.9897 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | homalt | 51.7475 | 41.7783 | 67.9657 | 72.7453 | 1029 | 1434 | 1029 | 485 | 445 | 91.7526 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| mlin-fermikit | INDEL | I6_15 | * | homalt | 94.2236 | 95.9609 | 92.5481 | 47.3706 | 5987 | 252 | 6011 | 484 | 481 | 99.3802 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | het | 95.0321 | 95.8369 | 94.2408 | 72.9383 | 7919 | 344 | 7920 | 484 | 255 | 52.6860 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7311 | 98.5279 | 96.9471 | 62.1515 | 15528 | 232 | 15370 | 484 | 412 | 85.1240 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.0855 | 97.5186 | 98.6590 | 52.4830 | 35684 | 908 | 35608 | 484 | 451 | 93.1818 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | het | 60.1108 | 53.7113 | 68.2415 | 93.5631 | 1042 | 898 | 1040 | 484 | 21 | 4.3388 | |
| anovak-vg | INDEL | * | segdup | homalt | 76.7205 | 93.1250 | 65.2299 | 92.3073 | 894 | 66 | 908 | 484 | 445 | 91.9421 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.6577 | 96.6080 | 96.7075 | 54.0122 | 14269 | 501 | 14216 | 484 | 156 | 32.2314 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2696 | 97.9874 | 96.5623 | 64.0273 | 12269 | 252 | 13595 | 484 | 266 | 54.9587 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | het | 99.0916 | 99.2132 | 98.9703 | 68.3138 | 46529 | 369 | 46518 | 484 | 7 | 1.4463 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 73.5605 | 66.5605 | 82.2059 | 36.1952 | 627 | 315 | 2236 | 484 | 477 | 98.5537 | |
| gduggal-bwafb | INDEL | I6_15 | * | homalt | 93.3335 | 94.2940 | 92.3923 | 40.2909 | 5883 | 356 | 5878 | 484 | 482 | 99.5868 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.3224 | 95.8089 | 92.8813 | 84.3204 | 6378 | 279 | 6315 | 484 | 93 | 19.2149 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9638 | 97.4619 | 98.4709 | 54.8834 | 31180 | 812 | 31104 | 483 | 468 | 96.8944 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.3153 | 78.8474 | 83.9428 | 62.4516 | 2531 | 679 | 2525 | 483 | 481 | 99.5859 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7354 | 78.9833 | 70.9211 | 58.2978 | 1041 | 277 | 1178 | 483 | 222 | 45.9627 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.5286 | 73.7548 | 88.6726 | 69.8081 | 3687 | 1312 | 3781 | 483 | 366 | 75.7764 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 80.5286 | 73.7548 | 88.6726 | 69.8081 | 3687 | 1312 | 3781 | 483 | 366 | 75.7764 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | homalt | 73.5533 | 99.1254 | 58.4695 | 77.3735 | 680 | 6 | 680 | 483 | 480 | 99.3789 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 46.0578 | 34.1432 | 70.7450 | 74.8821 | 1321 | 2548 | 1168 | 483 | 147 | 30.4348 | |
| astatham-gatk | INDEL | * | HG002compoundhet | het | 93.2853 | 98.3879 | 88.6859 | 79.4067 | 4028 | 66 | 3786 | 483 | 475 | 98.3437 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 37.6387 | 31.0491 | 47.7790 | 58.0455 | 367 | 815 | 441 | 482 | 356 | 73.8589 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.6349 | 65.9236 | 65.3487 | 72.3679 | 828 | 428 | 909 | 482 | 71 | 14.7303 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | het | 96.6790 | 99.4207 | 94.0844 | 84.2276 | 7894 | 46 | 7666 | 482 | 11 | 2.2822 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| ckim-dragen | INDEL | D6_15 | * | * | 97.9198 | 97.6928 | 98.1478 | 56.3201 | 25490 | 602 | 25488 | 481 | 433 | 90.0208 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | het | 97.3570 | 98.4523 | 96.2857 | 80.0772 | 12468 | 196 | 12469 | 481 | 37 | 7.6923 | |
| hfeng-pmm3 | INDEL | * | * | het | 99.4705 | 99.1923 | 99.7504 | 58.0356 | 192565 | 1568 | 192191 | 481 | 313 | 65.0728 | |
| ckim-isaac | SNP | tv | HG002complexvar | * | 95.4727 | 91.5159 | 99.7871 | 19.3101 | 225271 | 20884 | 225437 | 481 | 401 | 83.3680 | |