PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47451-47500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.6842 | 58.3333 | 100.0000 | 90.7080 | 21 | 15 | 21 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 35.8158 | 1310 | 1 | 1310 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.8945 | 42 | 0 | 42 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.8917 | 30 | 0 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 42.8571 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9223 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9272 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8325 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9254 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | * | 99.6618 | 99.3258 | 100.0000 | 42.1121 | 442 | 3 | 444 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | het | 99.5305 | 99.0654 | 100.0000 | 46.0957 | 212 | 2 | 214 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.0474 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.3844 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9487 | 86.8263 | 100.0000 | 68.5775 | 145 | 22 | 148 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4166 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||