PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4601-4650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | * | 72.6643 | 69.4575 | 76.1816 | 36.8312 | 1626 | 715 | 1628 | 509 | 505 | 99.2141 | |
| ckim-gatk | SNP | * | map_l150_m1_e0 | * | 80.0337 | 67.8232 | 97.6062 | 88.0251 | 20760 | 9849 | 20754 | 509 | 42 | 8.2515 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6962 | 98.4278 | 82.3875 | 81.4243 | 2379 | 38 | 2381 | 509 | 127 | 24.9509 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.2936 | 79.9879 | 72.9255 | 50.4089 | 1323 | 331 | 1371 | 509 | 198 | 38.8998 | |
| ciseli-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 30.2740 | 87.3110 | 0 | 0 | 221 | 509 | 139 | 27.3084 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.2556 | 88.9456 | 74.7895 | 89.6153 | 1569 | 195 | 1510 | 509 | 141 | 27.7014 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e1 | * | 97.0647 | 98.4698 | 95.6992 | 81.5758 | 11326 | 176 | 11326 | 509 | 90 | 17.6817 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0582 | 99.4990 | 96.6586 | 57.2289 | 14696 | 74 | 14695 | 508 | 335 | 65.9449 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | * | 96.3013 | 97.0233 | 95.5899 | 79.4079 | 11017 | 338 | 11011 | 508 | 83 | 16.3386 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | het | 95.1992 | 97.1870 | 93.2911 | 82.3459 | 7048 | 204 | 7064 | 508 | 83 | 16.3386 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.4976 | 75.5245 | 18.3280 | 86.4488 | 108 | 35 | 114 | 508 | 25 | 4.9213 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | * | 99.4317 | 99.5636 | 99.3001 | 65.4224 | 72087 | 316 | 72076 | 508 | 81 | 15.9449 | |
| astatham-gatk | SNP | * | * | het | 99.3521 | 98.7393 | 99.9725 | 20.1637 | 1849967 | 23620 | 1849845 | 508 | 95 | 18.7008 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | * | 88.1452 | 80.4375 | 97.4866 | 80.6623 | 19708 | 4793 | 19704 | 508 | 16 | 3.1496 | |
| rpoplin-dv42 | INDEL | I6_15 | * | * | 96.3018 | 94.7670 | 97.8872 | 49.6208 | 23524 | 1299 | 23536 | 508 | 491 | 96.6535 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | * | 98.6522 | 99.2920 | 98.0206 | 71.3656 | 25104 | 179 | 25107 | 507 | 45 | 8.8757 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.6253 | 90.1478 | 85.2402 | 88.4281 | 2928 | 320 | 2928 | 507 | 25 | 4.9310 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e1 | het | 99.2207 | 99.5181 | 98.9251 | 70.1134 | 46672 | 226 | 46661 | 507 | 63 | 12.4260 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.2868 | 95.8815 | 98.7340 | 45.9174 | 14015 | 602 | 39539 | 507 | 431 | 85.0099 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | homalt | 76.5861 | 87.2046 | 68.2728 | 79.5887 | 1070 | 157 | 1091 | 507 | 474 | 93.4911 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | * | 98.6448 | 99.2929 | 98.0051 | 71.3118 | 24856 | 177 | 24859 | 506 | 45 | 8.8933 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1784 | 93.5471 | 94.8182 | 69.0265 | 9423 | 650 | 9259 | 506 | 472 | 93.2806 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.2521 | 92.5164 | 80.7824 | 44.1095 | 2114 | 171 | 2127 | 506 | 178 | 35.1779 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | * | 0.6022 | 0.3733 | 1.5564 | 60.4311 | 8 | 2135 | 8 | 506 | 462 | 91.3043 | |
| jmaeng-gatk | SNP | tv | map_l100_m1_e0 | het | 91.2990 | 86.7484 | 96.3534 | 83.6231 | 13374 | 2043 | 13370 | 506 | 14 | 2.7668 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | het | 99.2145 | 99.5129 | 98.9179 | 70.0977 | 46173 | 226 | 46162 | 505 | 63 | 12.4752 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.7012 | 83.4697 | 48.9383 | 56.4509 | 510 | 101 | 484 | 505 | 504 | 99.8020 | |
| jli-custom | INDEL | * | HG002compoundhet | homalt | 72.9600 | 99.7085 | 57.5273 | 84.4270 | 684 | 2 | 684 | 505 | 502 | 99.4059 | |
| ckim-gatk | SNP | * | map_l150_m1_e0 | het | 84.3543 | 74.8499 | 96.6237 | 89.7210 | 14458 | 4858 | 14452 | 505 | 40 | 7.9208 | |
| ciseli-custom | INDEL | * | map_siren | homalt | 73.0250 | 68.4746 | 78.2234 | 81.7056 | 1818 | 837 | 1814 | 505 | 387 | 76.6337 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 28.9733 | 87.0161 | 0 | 0 | 206 | 505 | 54 | 10.6931 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | * | 95.4780 | 94.9616 | 96.0000 | 76.0355 | 12119 | 643 | 12120 | 505 | 265 | 52.4752 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | homalt | 88.0378 | 80.0821 | 97.7484 | 41.5287 | 21643 | 5383 | 21880 | 504 | 456 | 90.4762 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | * | 97.0484 | 98.4500 | 95.6860 | 81.5364 | 11179 | 176 | 11179 | 504 | 90 | 17.8571 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | * | 99.3646 | 99.4032 | 99.3261 | 65.5411 | 74291 | 446 | 74280 | 504 | 23 | 4.5635 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.0146 | 63.6573 | 82.8979 | 66.4923 | 2482 | 1417 | 2443 | 504 | 406 | 80.5556 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.9732 | 95.9483 | 76.2512 | 71.1719 | 1634 | 69 | 1615 | 503 | 405 | 80.5169 | |
| eyeh-varpipe | SNP | ti | HG002complexvar | het | 99.8630 | 99.8948 | 99.8311 | 17.2379 | 314435 | 331 | 297366 | 503 | 109 | 21.6700 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | het | 96.3773 | 93.9496 | 98.9337 | 53.9146 | 43416 | 2796 | 46670 | 503 | 367 | 72.9622 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 41.6309 | 53.2787 | 34.1623 | 32.5088 | 260 | 228 | 261 | 503 | 475 | 94.4334 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.7782 | 64.6063 | 83.3167 | 68.8822 | 2519 | 1380 | 2512 | 503 | 427 | 84.8907 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| egarrison-hhga | INDEL | * | HG002complexvar | homalt | 98.5044 | 98.8604 | 98.1509 | 53.6323 | 26719 | 308 | 26700 | 503 | 354 | 70.3777 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 44.1721 | 50.3828 | 39.3245 | 62.5903 | 329 | 324 | 326 | 503 | 469 | 93.2406 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0661 | 99.2298 | 98.9030 | 75.7127 | 45350 | 352 | 45350 | 503 | 38 | 7.5547 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0661 | 99.2298 | 98.9030 | 75.7127 | 45350 | 352 | 45350 | 503 | 38 | 7.5547 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | * | 98.0759 | 98.7207 | 97.4394 | 76.5498 | 19137 | 248 | 19141 | 503 | 56 | 11.1332 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | * | 98.2329 | 98.8933 | 97.5811 | 78.1929 | 20285 | 227 | 20292 | 503 | 67 | 13.3201 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4762 | 95.2989 | 97.6829 | 51.6687 | 21204 | 1046 | 21205 | 503 | 474 | 94.2346 | |