PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
4351-4400 / 86044 show all
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.6367
72.0025
89.0817
63.6267
455217704569560555
99.1071
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.3553
99.7468
97.0021
67.1820
181204618120560541
96.6071
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
60.2265
64.3636
56.5891
50.4418
531294730560480
85.7143
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
60.2265
64.3636
56.5891
50.4418
531294730560480
85.7143
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
78.4484
88.3268
70.5573
76.2813
13621801342560119
21.2500
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
53.7560
79.3033
40.6582
61.4881
387101383559525
93.9177
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8660
97.7360
97.9964
54.8200
2732663327341559392
70.1252
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
42.4890
35.9504
51.9347
63.3123
348620604559103
18.4258
gduggal-bwafbSNP*map_l125_m2_e0*
98.8404
98.8764
98.8045
74.2723
4619852546198559136
24.3292
gduggal-bwafbSNP*map_l125_m2_e1*
98.8522
98.8878
98.8166
74.3375
4667752546677559136
24.3292
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.4844
97.2451
91.8762
38.9766
64951846322559498
89.0877
jli-customINDEL**homalt
99.7041
99.8538
99.5548
57.2311
124989183124999559535
95.7066
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
88.5779
97.0912
81.4371
71.0683
24707424485588
1.4337
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.8316
98.2639
71.5886
71.6226
141525140655811
1.9713
anovak-vgSNPtilowcmp_SimpleRepeat_diTR_11to50het
89.0850
93.1385
85.3697
68.5884
29322163256558215
38.5305
ghariani-varprowlSNPtimap_l150_m2_e0*
97.8795
98.4497
97.3158
80.1688
2019431820194557133
23.8779
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.9586
98.9331
97.0031
50.6413
1798919418029557149
26.7504
jpowers-varprowlSNPtvmap_l100_m1_e0*
97.6764
97.6246
97.7283
72.0238
2391958223919556138
24.8201
gduggal-snapfbSNPtvmap_l125_m2_e0het
96.3724
97.9506
94.8442
74.2096
1022821410228556207
37.2302
ckim-gatkSNPtimap_l100_m1_e0het
92.7314
88.0536
97.9342
80.4366
2636535772635855660
10.7914
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
22.4034
18.2049
29.1188
44.6643
215966228555520
93.6937
ndellapenna-hhgaINDELI6_15**
96.5902
95.4921
97.7138
48.4477
23704111923721555427
76.9369
gduggal-bwafbSNPtvmap_siren*
99.0828
99.3686
98.7986
61.3728
456402904564055580
14.4144
gduggal-snapplatSNPtvmap_l150_m2_e1*
92.0738
89.4279
94.8810
86.0143
10286121610287555293
52.7928
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1699
56.9831
84.8219
60.1659
208915773096554345
62.2744
jpowers-varprowlSNP*map_l125_m0_e0het
95.4272
95.2464
95.6088
82.3444
1206260212062554169
30.5054
ghariani-varprowlSNPtimap_l100_m0_e0*
97.9382
98.3970
97.4836
73.1519
2142234921423553140
25.3165
cchapple-customSNP*HG002complexvarhet
99.7839
99.6872
99.8808
18.7433
4640411456463256553394
71.2477
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.7223
87.9766
95.8011
68.6010
14144193312617553435
78.6618
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.7223
87.9766
95.8011
68.6010
14144193312617553435
78.6618
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.8247
99.2858
94.4828
49.5258
9453689453552547
99.0942
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0569
99.3663
91.1057
57.4139
5645365644551548
99.4555
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
51.6769
55.4825
48.3599
47.7729
506406516551538
97.6407
gduggal-snapfbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
78.2170
70.8374
87.3129
79.9686
1092144963792551400
72.5953
gduggal-snapplatSNPtvmap_l150_m2_e1het
92.0469
91.6576
92.4396
88.3528
67356136737551289
52.4501
anovak-vgINDEL*map_l100_m2_e1het
70.6838
66.8374
75.0000
86.9385
15667771653551156
28.3122
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
90.5999
98.1413
84.1348
64.8517
290455292255127
4.9002
gduggal-snapplatSNPtvmap_l150_m2_e0*
92.0132
89.3351
94.8569
86.0094
10144121110144550292
53.0909
gduggal-snapfbSNPtvmap_l125_m1_e0het
96.2891
97.8866
94.7429
72.1296
99122149912550205
37.2727
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.5891
97.0144
98.1706
67.3997
2957091029515550132
24.0000
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.5891
97.0144
98.1706
67.3997
2957091029515550132
24.0000
qzeng-customSNP*map_l125_m0_e0het
78.6100
67.5932
93.9173
91.2651
856041048492550460
83.6364
gduggal-bwaplatINDEL*HG002complexvarhet
89.8971
82.6214
98.5779
61.4508
38181803138126550282
51.2727
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4986
96.2849
98.7434
52.0928
1715766243140549461
83.9709
ghariani-varprowlSNPtimap_l150_m2_e1het
97.2811
98.6938
95.9083
82.6594
1284517012845548124
22.6277
gduggal-snapvardSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
81.8084
94.5910
72.0693
83.9601
143482141454814
2.5547
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
79.6057
84.7414
75.0569
26.8642
16552981649548546
99.6350
ghariani-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50het
95.6807
99.1251
92.4676
62.1593
66855967155478
1.4625
anovak-vgINDEL*map_l100_m2_e0het
70.9065
67.2735
74.9542
86.8513
15527551637547155
28.3364