PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
4201-4250 / 86044 show all
ckim-gatkSNPtimap_l100_m2_e0*
89.9645
82.7516
98.5549
78.4080
4051684454050959470
11.7845
ciseli-customSNPtvmap_l125_m1_e0homalt
87.0129
84.8123
89.3307
67.3979
49708904965593461
77.7403
jmaeng-gatkSNPtimap_l100_m1_e0*
89.7569
82.4247
98.5209
77.3729
3950784243950059363
10.6239
qzeng-customSNP*map_l125_m0_e0*
78.3239
66.3606
95.5494
88.8093
12864652112731593502
84.6543
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.1325
94.2362
84.5533
48.1916
36462233246593548
92.4115
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.8171
94.6358
94.9992
46.8433
1123863711246592535
90.3716
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
60.7128
46.4157
87.7382
45.3351
439050684236592317
53.5473
gduggal-snapfbSNPtvmap_l125_m2_e1*
96.8978
97.3224
96.4768
75.8806
1621144616211592214
36.1486
ghariani-varprowlSNP*map_l150_m0_e0het
95.5372
98.2746
92.9482
86.2530
78031377803592131
22.1284
ghariani-varprowlSNPtvmap_l125_m1_e0het
96.7384
99.1507
94.4408
79.1185
10040861004059191
15.3976
jpowers-varprowlSNPtvmap_l100_m2_e1*
97.6564
97.6506
97.6622
73.7732
2468959424689591141
23.8579
eyeh-varpipeSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.2516
98.6776
88.3913
75.0612
470163450059144
7.4450
cchapple-customSNP*HG002complexvar*
99.8003
99.6796
99.9214
18.6735
7519642417749599590426
72.2034
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
81.1769
94.8227
70.9646
59.4330
1337731442590557
94.4068
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.9611
96.9686
82.1752
61.2865
2719852720590583
98.8136
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2227
71.1825
89.3103
43.3419
491819914921589580
98.4720
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
30.3025
78.7879
18.7586
80.9861
1303513658911
1.8676
gduggal-snapplatINDELI6_15HG002complexvar*
38.3420
26.7738
67.5124
60.4148
128335091224589145
24.6180
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4631
67.4647
93.7460
41.7311
377618218829589574
97.4533
ckim-isaacSNPtiHG002complexvar*
96.1858
92.7592
99.8753
15.7158
47162236815471809589446
75.7216
gduggal-bwafbINDEL*HG002complexvarhomalt
97.6327
97.4544
97.8116
53.5251
2633968826326589564
95.7555
jlack-gatkSNPtvmap_l150_m0_e0*
92.3966
97.9875
87.4091
87.6580
409084408958940
6.7912
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9650
99.8245
98.1202
75.4285
307075430692588582
98.9796
ckim-gatkSNPtimap_l100_m2_e1het
92.9104
88.4076
97.8964
81.4552
2737135892736458862
10.5442
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
72.7114
67.5333
78.7495
70.8829
20269742179588262
44.5578
gduggal-snapfbSNPtvmap_l125_m2_e0*
96.8780
97.2952
96.4644
75.8291
1604344616043588214
36.3946
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
21.5835
18.1202
26.6833
26.4895
214967214588544
92.5170
anovak-vgINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
56.0188
50.6667
62.6353
47.3349
532518984587499
85.0085
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
76.6177
84.7222
69.9283
81.0889
10981981365587286
48.7223
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.3594
91.9064
88.8636
53.3705
51444534684587468
79.7274
qzeng-customSNPtimap_l100_m1_e0*
87.5018
78.7403
98.4572
75.1333
377411019037460587485
82.6235
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.4308
85.9873
58.2206
70.8929
810132818587575
97.9557
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
79.0223
86.0771
73.0363
71.1846
9151481590587460
78.3646
jpowers-varprowlSNPtvmap_l100_m2_e0*
97.6510
97.6471
97.6549
73.7409
2444458924444587140
23.8501
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
59.6174
68.6837
52.6656
65.6874
647295652586580
98.9761
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1231
96.5890
97.6631
54.5313
2449486524490586552
94.1980
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
82.2424
75.3576
90.5117
53.1553
458414995590586545
93.0034
gduggal-bwaplatINDEL**homalt
94.8233
90.5786
99.4855
59.5744
11337911793113311586499
85.1536
gduggal-bwafbINDELI1_5HG002compoundhethomalt
52.2901
97.8723
35.6751
79.4310
3227325586578
98.6348
ghariani-varprowlSNPtisegduphet
97.4023
99.5594
95.3366
92.6943
1197753119805862
0.3413
ndellapenna-hhgaSNPtv**
99.8629
99.7865
99.9395
20.8763
9676202070967646586175
29.8635
jmaeng-gatkSNPtimap_l100_m1_e0het
92.5822
87.8732
97.8244
80.8303
2631136312630458555
9.4017
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
39.0803
30.2044
55.3435
41.1500
399922725585494
84.4444
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
86.6794
93.1497
81.0496
83.5702
250218425025858
1.3675
gduggal-snapplatSNPtimap_l125_m0_e0*
91.6685
88.4893
95.0846
83.9409
11293146911297584340
58.2192
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
24.2451
16.1226
48.8616
65.3414
5632929558584571
97.7740
qzeng-customINDELD16_PLUS*homalt
83.8251
97.1040
73.7410
65.8948
1643491640584105
17.9795
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1119
93.7088
90.5685
58.7145
18471245608584448
76.7123
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.6023
95.2631
93.9507
47.7088
90704519070584265
45.3767