PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42401-42450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.0345 | 85.7143 | 97.0588 | 87.3606 | 36 | 6 | 33 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0330 | 86.1111 | 96.5517 | 86.1244 | 31 | 5 | 28 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 30.6546 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9020 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.8970 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.1393 | 65.8683 | 99.1071 | 71.1340 | 110 | 57 | 111 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.7721 | 78.5408 | 99.4624 | 73.8764 | 183 | 50 | 185 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8873 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | hetalt | 61.8722 | 45.1613 | 98.2143 | 85.2632 | 56 | 68 | 55 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | hetalt | 61.5385 | 44.8000 | 98.2456 | 86.6822 | 56 | 69 | 56 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | hetalt | 60.7330 | 43.9394 | 98.3051 | 86.6817 | 58 | 74 | 58 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | hetalt | 40.0000 | 27.2727 | 75.0000 | 94.2857 | 3 | 8 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | hetalt | 75.3623 | 61.9048 | 96.2963 | 89.1566 | 26 | 16 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | hetalt | 33.3333 | 22.2222 | 66.6667 | 92.5000 | 2 | 7 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 91.8699 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 93.2886 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | hetalt | 58.8235 | 43.4783 | 90.9091 | 92.9487 | 10 | 13 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | het | 93.3333 | 89.7436 | 97.2222 | 44.6154 | 35 | 4 | 35 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | decoy | * | 92.3077 | 100.0000 | 85.7143 | 99.0085 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | decoy | het | 88.8889 | 100.0000 | 80.0000 | 98.8479 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.1968 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.1489 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 57.1429 | 50.0000 | 66.6667 | 87.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 57.7428 | 42.3077 | 90.9091 | 78.4314 | 11 | 15 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 57.8947 | 42.3077 | 91.6667 | 78.1818 | 11 | 15 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 52.3810 | 36.6667 | 91.6667 | 78.9474 | 11 | 19 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 80.9524 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 75.0000 | 75.0000 | 75.0000 | 80.9524 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 75.0000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_siren | hetalt | 66.6667 | 51.6129 | 94.1176 | 83.1683 | 16 | 15 | 16 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | het | 98.8235 | 98.8235 | 98.8235 | 29.7521 | 84 | 1 | 84 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | homalt | 99.3289 | 100.0000 | 98.6667 | 21.0526 | 74 | 0 | 74 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 90.0000 | 90.0000 | 90.0000 | 99.1349 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 99.3534 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.3175 | 40.2014 | 99.8145 | 34.3484 | 519 | 772 | 538 | 1 | 1 | 100.0000 | |