PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42151-42200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.8881 | 71.6667 | 98.2759 | 94.5283 | 43 | 17 | 57 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 91.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 52.1739 | 40.0000 | 75.0000 | 96.4602 | 2 | 3 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.2963 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.4286 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.6301 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8261 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.6111 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 97.9592 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.1831 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 97.1429 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | * | 90.9091 | 100.0000 | 83.3333 | 53.8462 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | het | 85.7143 | 100.0000 | 75.0000 | 42.8571 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | decoy | * | 0.0000 | 0.0000 | 99.9897 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | decoy | homalt | 0.0000 | 0.0000 | 99.9475 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.4883 | 73.2719 | 80.0000 | 75.0000 | 159 | 58 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.3338 | 91.6933 | 99.2754 | 35.5140 | 287 | 26 | 137 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | decoy | * | 0.0000 | 0.0000 | 99.9286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | decoy | homalt | 0.0000 | 0.0000 | 99.5595 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | het | 41.8605 | 27.2727 | 90.0000 | 94.5946 | 9 | 24 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 37.9310 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | het | 87.5000 | 87.5000 | 87.5000 | 33.3333 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 44.9406 | 29.0138 | 99.6337 | 37.6712 | 253 | 619 | 272 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 52.6316 | 90.9091 | 71.7949 | 10 | 9 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 68.7500 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 71.6981 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 66.6667 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 73.5849 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 76.4706 | 65.0000 | 92.8571 | 75.0000 | 13 | 7 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 28.5714 | 20.0000 | 50.0000 | 77.7778 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 76.1905 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 81.4815 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 57.1429 | 44.4444 | 80.0000 | 82.7586 | 4 | 5 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.7654 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 97.2222 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_siren | hetalt | 71.7865 | 56.5657 | 98.2143 | 72.8155 | 56 | 43 | 55 | 1 | 0 | 0.0000 | |