PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41851-41900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 59.5731 | 42.4788 | 99.6904 | 42.1147 | 401 | 543 | 322 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.0653 | 42.9847 | 99.6711 | 45.3237 | 337 | 447 | 303 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 77.4105 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0581 | 98.0769 | 98.0392 | 78.7500 | 51 | 1 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.0371 | 50.6098 | 99.2537 | 54.5763 | 166 | 162 | 133 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.8792 | 49.0196 | 91.6667 | 42.8571 | 25 | 26 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 85.7143 | 80.0000 | 92.3077 | 90.1515 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.3448 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 94.2029 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 92.9515 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.5517 | 100.0000 | 93.3333 | 90.7975 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.9091 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 91.0526 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.6522 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 94.9367 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 95.3125 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 95.5056 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 95.4545 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 95.6044 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.6585 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 33.0544 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 37.6812 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8662 | 81.0811 | 98.3051 | 80.6557 | 60 | 14 | 58 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 76.3171 | 63.2653 | 96.1538 | 23.5294 | 31 | 18 | 25 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 94.4751 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 45.4545 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 47.0588 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.5510 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.6667 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 68.6649 | 53.8462 | 94.7368 | 73.6111 | 21 | 18 | 18 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 91.3043 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 69.2731 | 53.6082 | 97.8723 | 31.8841 | 52 | 45 | 46 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 88.4793 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 92.0245 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 88.0282 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 88.3871 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 71.1864 | 60.0000 | 87.5000 | 90.3614 | 12 | 8 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2973 | 97.2973 | 97.2973 | 88.3281 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.4148 | 95.0000 | 95.8333 | 93.3148 | 19 | 1 | 23 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 94.2446 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.1538 | 96.1538 | 96.1538 | 88.9831 | 25 | 1 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 89.5911 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |