PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4101-4150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | HG002compoundhet | het | 94.4229 | 98.7586 | 90.4519 | 56.9085 | 14002 | 176 | 5845 | 617 | 93 | 15.0729 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 29.6006 | 20.5326 | 53.0130 | 62.9452 | 717 | 2775 | 695 | 616 | 592 | 96.1039 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.3344 | 87.5000 | 2.2222 | 78.2983 | 14 | 2 | 14 | 616 | 3 | 0.4870 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 40.2264 | 28.2838 | 69.6252 | 65.8356 | 1503 | 3811 | 1412 | 616 | 90 | 14.6104 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 76.8144 | 64.9791 | 93.9211 | 77.3415 | 9498 | 5119 | 9502 | 615 | 178 | 28.9431 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.2348 | 75.6579 | 15.8687 | 80.7530 | 115 | 37 | 116 | 615 | 18 | 2.9268 | |
| qzeng-custom | SNP | ti | map_l100_m2_e1 | * | 87.8109 | 79.2503 | 98.4448 | 76.3141 | 39217 | 10268 | 38930 | 615 | 490 | 79.6748 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | homalt | 49.1644 | 93.9210 | 33.2972 | 76.0021 | 309 | 20 | 307 | 615 | 607 | 98.6992 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8647 | 92.1636 | 97.7290 | 70.8955 | 26462 | 2250 | 26465 | 615 | 21 | 3.4146 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8647 | 92.1636 | 97.7290 | 70.8955 | 26462 | 2250 | 26465 | 615 | 21 | 3.4146 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | * | 87.7079 | 79.0936 | 98.4279 | 76.3519 | 38725 | 10236 | 38442 | 614 | 490 | 79.8046 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.1128 | 95.5215 | 73.5573 | 89.2251 | 1685 | 79 | 1708 | 614 | 76 | 12.3779 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | * | 89.9408 | 82.7455 | 98.5068 | 78.6206 | 40513 | 8448 | 40506 | 614 | 64 | 10.4235 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | * | 65.7644 | 60.3702 | 72.2172 | 91.9134 | 1598 | 1049 | 1596 | 614 | 128 | 20.8469 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 43.7922 | 49.2121 | 39.4477 | 61.5764 | 406 | 419 | 400 | 614 | 591 | 96.2541 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 43.7922 | 49.2121 | 39.4477 | 61.5764 | 406 | 419 | 400 | 614 | 591 | 96.2541 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.4567 | 61.1138 | 68.1865 | 74.1910 | 1284 | 817 | 1316 | 614 | 580 | 94.4625 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9868 | 95.2804 | 94.6949 | 56.1929 | 10942 | 542 | 10942 | 613 | 287 | 46.8189 | |
| gduggal-bwafb | INDEL | D6_15 | * | homalt | 94.1794 | 97.6288 | 90.9654 | 58.3129 | 6176 | 150 | 6172 | 613 | 608 | 99.1843 | |
| eyeh-varpipe | INDEL | I6_15 | HG002complexvar | * | 76.1535 | 69.3656 | 84.4139 | 46.8082 | 3324 | 1468 | 3320 | 613 | 606 | 98.8581 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.6126 | 88.1402 | 50.9992 | 62.4437 | 654 | 88 | 638 | 613 | 589 | 96.0848 | |
| rpoplin-dv42 | SNP | * | * | het | 99.9475 | 99.9278 | 99.9673 | 19.5765 | 1872234 | 1353 | 1872094 | 613 | 268 | 43.7194 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | * | 96.8497 | 96.6995 | 97.0004 | 78.4535 | 19835 | 677 | 19823 | 613 | 163 | 26.5905 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.2615 | 74.0424 | 87.6212 | 52.2423 | 4504 | 1579 | 4339 | 613 | 548 | 89.3964 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| eyeh-varpipe | SNP | ti | HG002complexvar | * | 99.8888 | 99.9038 | 99.8738 | 17.3355 | 507948 | 489 | 484239 | 612 | 191 | 31.2092 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.6150 | 96.8720 | 83.3696 | 61.8257 | 3066 | 99 | 3068 | 612 | 603 | 98.5294 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 59.5098 | 45.1054 | 87.4307 | 85.0479 | 4193 | 5103 | 4257 | 612 | 532 | 86.9281 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e1 | het | 96.7733 | 99.1851 | 94.4760 | 80.5468 | 10467 | 86 | 10467 | 612 | 94 | 15.3595 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | het | 92.7795 | 88.2397 | 97.8118 | 81.8240 | 27319 | 3641 | 27312 | 611 | 56 | 9.1653 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.5263 | 95.4338 | 79.1396 | 59.8767 | 836 | 40 | 2318 | 611 | 258 | 42.2259 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.9379 | 91.7293 | 37.2045 | 59.0488 | 366 | 33 | 362 | 611 | 566 | 92.6350 | |
| ciseli-custom | INDEL | I16_PLUS | * | * | 18.6757 | 11.2906 | 53.9910 | 75.8984 | 720 | 5657 | 717 | 611 | 525 | 85.9247 | |
| jlack-gatk | INDEL | I6_15 | HG002compoundhet | * | 90.8429 | 89.0155 | 92.7469 | 37.7522 | 7812 | 964 | 7813 | 611 | 606 | 99.1817 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 82.4034 | 96.8987 | 71.6806 | 60.7006 | 1531 | 49 | 1544 | 610 | 3 | 0.4918 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | homalt | 87.1141 | 84.9193 | 89.4252 | 70.0769 | 5158 | 916 | 5150 | 609 | 473 | 77.6683 | |
| hfeng-pmm2 | INDEL | * | * | homalt | 99.6594 | 99.8043 | 99.5149 | 55.8756 | 124927 | 245 | 124935 | 609 | 588 | 96.5517 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.1155 | 32.1540 | 81.5062 | 55.9877 | 2690 | 5676 | 2684 | 609 | 538 | 88.3415 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.5147 | 94.2784 | 98.8597 | 54.0704 | 52448 | 3183 | 52797 | 609 | 355 | 58.2923 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.0825 | 75.8761 | 96.8314 | 49.6990 | 18620 | 5920 | 18611 | 609 | 395 | 64.8604 | |
| anovak-vg | SNP | * | segdup | * | 97.8173 | 97.8231 | 97.8116 | 92.2860 | 27456 | 611 | 27219 | 609 | 236 | 38.7521 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.3116 | 95.7208 | 92.9434 | 47.3511 | 8008 | 358 | 8008 | 608 | 274 | 45.0658 | |
| ghariani-varprowl | SNP | tv | map_l125_m2_e0 | het | 96.7579 | 99.1764 | 94.4546 | 80.4692 | 10356 | 86 | 10356 | 608 | 93 | 15.2961 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 70.7005 | 95.7309 | 56.0463 | 69.8866 | 740 | 33 | 774 | 607 | 47 | 7.7430 | |
| asubramanian-gatk | INDEL | I1_5 | * | * | 99.0996 | 98.6108 | 99.5933 | 59.2515 | 148571 | 2093 | 148648 | 607 | 454 | 74.7941 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4525 | 98.8280 | 98.0798 | 67.6014 | 30778 | 365 | 31005 | 607 | 33 | 5.4366 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4525 | 98.8280 | 98.0798 | 67.6014 | 30778 | 365 | 31005 | 607 | 33 | 5.4366 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 76.1074 | 78.6642 | 73.7116 | 78.2560 | 1696 | 460 | 1702 | 607 | 378 | 62.2735 | |