PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40201-40250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 80.0000 | 72.7273 | 88.8889 | 85.0000 | 8 | 3 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.8571 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 93.5484 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | homalt | 90.0000 | 85.7143 | 94.7368 | 76.8293 | 18 | 3 | 18 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 91.6961 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | het | 97.9592 | 100.0000 | 96.0000 | 91.6667 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4848 | 97.5000 | 99.4898 | 65.3710 | 195 | 5 | 195 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.7376 | 96.4286 | 99.0826 | 75.1708 | 108 | 4 | 108 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4790 | 96.6667 | 98.3051 | 81.6770 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.6644 | 48.0447 | 98.8636 | 26.6667 | 86 | 93 | 87 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.1476 | 87.5576 | 99.5000 | 42.6934 | 190 | 27 | 199 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 99.1803 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 48.9796 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 86.9565 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4224 | 97.3958 | 99.4709 | 88.5938 | 187 | 5 | 188 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | het | 98.0997 | 97.1698 | 99.0476 | 92.0814 | 103 | 3 | 104 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 96.7480 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.9610 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.8495 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5366 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.5714 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 36.0000 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 86.7813 | 76.7925 | 99.7573 | 48.6284 | 407 | 123 | 411 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.1765 | 86.1111 | 96.8750 | 70.9091 | 31 | 5 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.5056 | 92.3913 | 98.8372 | 69.0647 | 85 | 7 | 85 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 55.8140 | 39.1304 | 97.2973 | 67.2566 | 36 | 56 | 36 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 60.0000 | 43.3735 | 97.2973 | 32.7273 | 36 | 47 | 36 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5740 | 96.7742 | 98.3871 | 84.9148 | 60 | 2 | 61 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.5663 | 86.3636 | 97.4359 | 74.3421 | 38 | 6 | 38 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.6415 | 95.8333 | 99.5192 | 63.1206 | 207 | 9 | 207 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1576 | 98.5646 | 99.7579 | 44.6381 | 412 | 6 | 412 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3437 | 97.5410 | 99.1597 | 59.6610 | 119 | 3 | 118 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.7778 | 100.0000 | 95.6522 | 77.6699 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.7778 | 100.0000 | 95.6522 | 79.4643 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 97.7778 | 100.0000 | 95.6522 | 80.3419 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 94.1176 | 100.0000 | 88.8889 | 83.9286 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 94.1176 | 100.0000 | 88.8889 | 86.3636 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 94.1176 | 100.0000 | 88.8889 | 86.9565 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9130 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 97.9167 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||