PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
351-400 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | * | * | 98.8646 | 98.0471 | 99.6958 | 26.6546 | 2994965 | 59654 | 2995523 | 9139 | 1314 | 14.3779 | |
| gduggal-bwafb | SNP | * | * | * | 99.7820 | 99.8619 | 99.7021 | 21.9848 | 3050417 | 4217 | 3050656 | 9115 | 775 | 8.5025 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.1881 | 96.8041 | 64.1824 | 31.3791 | 10026 | 331 | 16242 | 9064 | 9022 | 99.5366 | |
| ckim-dragen | SNP | * | * | het | 99.7355 | 99.9519 | 99.5199 | 24.5349 | 1872686 | 901 | 1873038 | 9035 | 444 | 4.9142 | |
| gduggal-snapplat | SNP | tv | * | * | 98.6169 | 98.1754 | 99.0623 | 31.7051 | 952005 | 17693 | 952368 | 9015 | 1026 | 11.3810 | |
| eyeh-varpipe | SNP | ti | * | het | 99.6284 | 99.9615 | 99.2976 | 20.5443 | 1281404 | 493 | 1264336 | 8944 | 171 | 1.9119 | |
| gduggal-bwaplat | SNP | * | * | het | 98.8209 | 98.1336 | 99.5179 | 30.8495 | 1838619 | 34968 | 1839500 | 8912 | 1113 | 12.4888 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | het | 75.1230 | 97.0518 | 61.2774 | 50.8228 | 13760 | 418 | 14027 | 8864 | 298 | 3.3619 | |
| qzeng-custom | INDEL | * | * | het | 97.1762 | 98.2811 | 96.0960 | 58.8639 | 190796 | 3337 | 217691 | 8844 | 3946 | 44.6178 | |
| gduggal-bwafb | SNP | * | * | het | 99.6957 | 99.8616 | 99.5303 | 23.9839 | 1871007 | 2594 | 1871215 | 8830 | 595 | 6.7384 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.5713 | 98.5668 | 83.7756 | 81.6259 | 45047 | 655 | 45212 | 8756 | 515 | 5.8817 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.5713 | 98.5668 | 83.7756 | 81.6259 | 45047 | 655 | 45212 | 8756 | 515 | 5.8817 | |
| anovak-vg | INDEL | I6_15 | * | * | 44.4248 | 38.7222 | 52.0973 | 38.6048 | 9612 | 15211 | 9514 | 8748 | 6474 | 74.0055 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.4923 | 93.0272 | 16.8223 | 79.7480 | 1641 | 123 | 1747 | 8638 | 126 | 1.4587 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 49.3962 | 45.5461 | 53.9573 | 55.1768 | 10134 | 12116 | 10117 | 8633 | 8451 | 97.8918 | |
| gduggal-snapfb | SNP | * | HG002complexvar | het | 98.8655 | 99.5639 | 98.1768 | 21.9725 | 463470 | 2030 | 464235 | 8621 | 899 | 10.4280 | |
| ciseli-custom | SNP | * | HG002compoundhet | het | 65.9081 | 78.7276 | 56.6789 | 49.8597 | 11162 | 3016 | 11240 | 8591 | 230 | 2.6772 | |
| ciseli-custom | INDEL | D1_5 | * | homalt | 89.1477 | 94.5898 | 84.2977 | 60.0900 | 46279 | 2647 | 46067 | 8581 | 7193 | 83.8247 | |
| mlin-fermikit | INDEL | * | * | het | 96.2161 | 96.8146 | 95.6251 | 53.1659 | 187949 | 6184 | 187516 | 8579 | 8282 | 96.5381 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 79.2334 | 93.9527 | 68.5015 | 74.7853 | 18395 | 1184 | 18642 | 8572 | 188 | 2.1932 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 79.2334 | 93.9527 | 68.5015 | 74.7853 | 18395 | 1184 | 18642 | 8572 | 188 | 2.1932 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.9680 | 69.6854 | 85.9503 | 79.9286 | 44899 | 19532 | 52067 | 8511 | 3951 | 46.4223 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.2291 | 94.8867 | 50.8665 | 79.7967 | 8666 | 467 | 8806 | 8506 | 164 | 1.9281 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.2291 | 94.8867 | 50.8665 | 79.7967 | 8666 | 467 | 8806 | 8506 | 164 | 1.9281 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8395 | 42.0033 | 50.4468 | 47.0151 | 8651 | 11945 | 8637 | 8484 | 8329 | 98.1730 | |
| gduggal-snapplat | SNP | tv | * | het | 98.3145 | 98.0664 | 98.5638 | 36.3598 | 580263 | 11441 | 580658 | 8461 | 866 | 10.2352 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.6919 | 47.1555 | 68.0020 | 66.7689 | 15086 | 16906 | 17977 | 8459 | 3479 | 41.1278 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 45.9726 | 41.2090 | 51.9814 | 51.1983 | 9169 | 13081 | 9156 | 8458 | 8386 | 99.1487 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 59.8797 | 85.7519 | 46.0008 | 48.3317 | 7174 | 1192 | 7166 | 8412 | 7803 | 92.7603 | |
| anovak-vg | SNP | * | HG002complexvar | het | 97.3572 | 96.6062 | 98.1199 | 19.3647 | 449702 | 15798 | 439022 | 8412 | 6308 | 74.9881 | |
| jpowers-varprowl | SNP | tv | * | * | 99.3067 | 99.4773 | 99.1367 | 27.6192 | 964620 | 5069 | 964862 | 8402 | 1363 | 16.2223 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1835 | 87.6412 | 51.8876 | 46.8905 | 9077 | 1280 | 9044 | 8386 | 7588 | 90.4841 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.2473 | 96.5460 | 49.2736 | 54.6440 | 8106 | 290 | 8140 | 8380 | 8238 | 98.3055 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 42.1139 | 37.4782 | 48.0583 | 42.5126 | 7719 | 12877 | 7710 | 8333 | 8271 | 99.2560 | |
| anovak-vg | SNP | tv | map_siren | * | 87.1130 | 91.2040 | 83.3733 | 62.1288 | 41890 | 4040 | 41755 | 8327 | 1807 | 21.7005 | |
| mlin-fermikit | SNP | ti | * | homalt | 99.0118 | 99.0588 | 98.9648 | 15.5441 | 795481 | 7558 | 795502 | 8321 | 8052 | 96.7672 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 79.2304 | 81.6976 | 76.9079 | 69.6191 | 25131 | 5630 | 27693 | 8315 | 7083 | 85.1834 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.6517 | 96.2893 | 46.4314 | 47.0193 | 7110 | 274 | 7143 | 8241 | 8121 | 98.5439 | |
| jpowers-varprowl | SNP | ti | * | * | 99.5767 | 99.5483 | 99.6052 | 21.1558 | 2076086 | 9421 | 2076295 | 8230 | 1307 | 15.8809 | |
| ciseli-custom | INDEL | D1_5 | HG002compoundhet | * | 12.2198 | 10.7660 | 14.1277 | 72.1816 | 1317 | 10916 | 1354 | 8230 | 6259 | 76.0510 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 60.2556 | 85.1120 | 46.6359 | 49.9659 | 7146 | 1250 | 7181 | 8217 | 8174 | 99.4767 | |
| ghariani-varprowl | INDEL | D6_15 | * | * | 61.5999 | 58.5275 | 65.0128 | 56.9372 | 15271 | 10821 | 15265 | 8215 | 8072 | 98.2593 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.1154 | 90.5013 | 80.3346 | 69.7300 | 30079 | 3157 | 33518 | 8205 | 5776 | 70.3961 | |
| anovak-vg | SNP | tv | map_siren | het | 83.8130 | 92.8414 | 76.3848 | 65.0646 | 26561 | 2048 | 26517 | 8198 | 1714 | 20.9075 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 82.8791 | 91.0940 | 76.0233 | 83.7724 | 26154 | 2557 | 25854 | 8154 | 268 | 3.2867 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.8791 | 91.0940 | 76.0233 | 83.7724 | 26154 | 2557 | 25854 | 8154 | 268 | 3.2867 | |