PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39901-39950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 23 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 22 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 61 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 84.6154 | 0 | 6 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 87.5000 | 84.3137 | 0 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 48.2759 | 33.3333 | 87.5000 | 86.8852 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.1075 | 18.1818 | 87.5000 | 88.4058 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 48.2759 | 33.3333 | 87.5000 | 88.4058 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 30.1075 | 18.1818 | 87.5000 | 88.7324 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 48.2759 | 33.3333 | 87.5000 | 88.7324 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 21 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | decoy | * | 0.0000 | 0.0000 | 99.9894 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | decoy | het | 0.0000 | 0.0000 | 99.9880 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | func_cds | homalt | 96.1113 | 93.2773 | 99.1228 | 19.1489 | 111 | 8 | 113 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.9259 | 61.5000 | 99.1935 | 60.2564 | 123 | 77 | 123 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.2264 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 7.2838 | 3.7915 | 92.3077 | 60.6061 | 8 | 203 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 8.1356 | 4.2553 | 92.3077 | 59.3750 | 8 | 180 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 13.3942 | 7.1895 | 97.7778 | 42.3077 | 11 | 142 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 50.0000 | 0.0000 | 99.9466 | 1 | 1 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.9462 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 7.6923 | 0.0000 | 87.5000 | 1 | 12 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0.0000 | 87.5000 | 1 | 0 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | ti | func_cds | homalt | 99.6385 | 99.2986 | 99.9808 | 20.4816 | 5238 | 37 | 5217 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | tv | func_cds | homalt | 99.2613 | 98.5915 | 99.9402 | 26.1484 | 1680 | 24 | 1671 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | homalt | 85.5895 | 75.3846 | 98.9899 | 78.1457 | 98 | 32 | 98 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | homalt | 86.6667 | 78.0000 | 97.5000 | 90.4988 | 39 | 11 | 39 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | * | 87.5000 | 82.3529 | 93.3333 | 55.8824 | 14 | 3 | 14 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | het | 90.0000 | 90.0000 | 90.0000 | 58.3333 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | * | 81.8182 | 75.0000 | 90.0000 | 65.5172 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | het | 88.8889 | 88.8889 | 88.8889 | 59.0909 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 94.0594 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 93.7500 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 85.7143 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 80.0000 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 94.4444 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.2381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.7368 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.6522 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.9184 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |