PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39751-39800 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 92.3077 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 96.5517 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 92.8571 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5154 | 97.1471 | 99.9228 | 63.2207 | 1294 | 38 | 1294 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.6369 | 75.2427 | 99.3631 | 51.2422 | 155 | 51 | 156 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.0739 | 75.9777 | 99.2647 | 40.3509 | 136 | 43 | 135 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 52.6316 | 38.4615 | 83.3333 | 99.1018 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.3377 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.2793 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.3344 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 61.5385 | 50.0000 | 80.0000 | 99.1776 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 45.8495 | 29.7945 | 99.4253 | 32.5581 | 174 | 410 | 173 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | * | 49.0706 | 34.3750 | 85.7143 | 98.0609 | 11 | 21 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | het | 48.6957 | 35.0000 | 80.0000 | 97.7578 | 7 | 13 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | homalt | 51.8357 | 35.3846 | 96.8750 | 91.1846 | 46 | 84 | 31 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | * | 10.5263 | 5.8824 | 50.0000 | 85.7143 | 1 | 16 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.2958 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 49.5868 | 35.2941 | 83.3333 | 98.9455 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.9114 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 57.1429 | 66.6667 | 50.0000 | 99.1416 | 2 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 52.1739 | 40.0000 | 75.0000 | 99.2395 | 4 | 6 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 84.6473 | 75.0000 | 97.1429 | 97.2332 | 33 | 11 | 34 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 85.0304 | 75.5556 | 97.2222 | 97.5121 | 34 | 11 | 35 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 85.3948 | 76.0870 | 97.2973 | 97.5067 | 35 | 11 | 36 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | homalt | 60.0000 | 46.1538 | 85.7143 | 75.8621 | 6 | 7 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 37.5000 | 25.0000 | 75.0000 | 89.7436 | 3 | 9 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 99.0291 | 0 | 8 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.3607 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 99.2806 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||