PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39651-39700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 83.3333 | 97.8873 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.2121 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7239 | 97.5877 | 99.8869 | 55.9761 | 890 | 22 | 883 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4013 | 97.0721 | 99.7674 | 68.6817 | 431 | 13 | 429 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.0042 | 73.5294 | 97.9592 | 95.6328 | 50 | 18 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.6757 | 66.6667 | 87.5000 | 94.5946 | 6 | 3 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.1670 | 73.6842 | 92.8571 | 88.7097 | 14 | 5 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.4348 | 10 | 2 | 10 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.1158 | 85.1852 | 95.6522 | 89.5928 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.3268 | 85.0000 | 94.1176 | 88.2759 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.1158 | 85.1852 | 95.6522 | 90.6504 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.3268 | 85.0000 | 94.1176 | 89.7590 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 88.3843 | 82.1429 | 95.6522 | 90.7631 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.3268 | 85.0000 | 94.1176 | 89.8810 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 91.3580 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.2745 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 91.6667 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 84.6154 | 78.5714 | 91.6667 | 88.3495 | 11 | 3 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 87.5000 | 82.3529 | 93.3333 | 91.6667 | 14 | 3 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 86.6667 | 81.2500 | 92.8571 | 88.7097 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.8485 | 77.7778 | 93.3333 | 91.8033 | 14 | 4 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 88.8889 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | het | 93.2340 | 88.4615 | 98.5507 | 87.7876 | 69 | 9 | 68 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | func_cds | * | 99.0556 | 98.7421 | 99.3711 | 31.1688 | 157 | 2 | 158 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | func_cds | het | 98.8304 | 98.8235 | 98.8372 | 34.8485 | 84 | 1 | 85 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.9942 | 94.5946 | 97.4359 | 91.7021 | 35 | 2 | 38 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8080 | 99.6266 | 99.9901 | 51.1176 | 10140 | 38 | 10103 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.1302 | 98.4848 | 99.7840 | 42.2693 | 455 | 7 | 462 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6116 | 99.6124 | 99.6109 | 81.3091 | 257 | 1 | 256 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | het | 95.7836 | 92.1739 | 99.6875 | 74.7036 | 318 | 27 | 319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 85.2590 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.0886 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | homalt | 99.0057 | 98.1180 | 99.9096 | 52.1005 | 1147 | 22 | 1105 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.3104 | 96.3636 | 98.2759 | 72.6415 | 53 | 2 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5343 | 99.1889 | 99.8821 | 57.8109 | 856 | 7 | 847 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.0142 | 96.9697 | 97.0588 | 74.4361 | 32 | 1 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9615 | 94.5946 | 97.3684 | 70.7692 | 35 | 2 | 37 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6411 | 87.7193 | 98.1481 | 99.2565 | 50 | 7 | 53 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 88.8889 | 88.8889 | 88.8889 | 99.4678 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.4828 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |