PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39401-39450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 78.4739 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2879 | 94.7438 | 99.9725 | 25.8927 | 3605 | 200 | 3631 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.3856 | 74.8603 | 99.3548 | 23.2673 | 134 | 45 | 154 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 83.3333 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.1575 | 89.2405 | 99.6479 | 69.7551 | 282 | 34 | 283 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3590 | 98.9362 | 99.7854 | 67.0205 | 465 | 5 | 465 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8131 | 100.0000 | 99.6269 | 65.1948 | 267 | 0 | 267 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 56.1404 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 89.6552 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6077 | 96.2264 | 99.0291 | 91.8124 | 102 | 4 | 102 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 93.6170 | 91.6667 | 95.6522 | 97.7046 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.2825 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 95.7265 | 93.3333 | 98.2456 | 96.0798 | 56 | 4 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1240 | 93.9394 | 98.4127 | 96.2985 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1240 | 93.9394 | 98.4127 | 96.4286 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 38.2353 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5415 | 89.8113 | 99.7976 | 44.9275 | 476 | 54 | 493 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2812 | 96.8927 | 99.7101 | 66.5373 | 343 | 11 | 344 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 66.6667 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9543 | 90.6336 | 99.7076 | 43.5644 | 329 | 34 | 341 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5441 | 77.1084 | 98.6111 | 27.2727 | 64 | 19 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1373 | 96.5517 | 99.7758 | 69.8852 | 448 | 16 | 445 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4034 | 93.5484 | 99.4382 | 67.4589 | 174 | 12 | 177 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.3077 | 92.3077 | 92.3077 | 66.6667 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 90.6574 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 92.8571 | 88.1356 | 98.1132 | 84.9432 | 52 | 7 | 52 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 85.5405 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 85.6397 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 85.9580 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 93.1034 | 88.5246 | 98.1818 | 85.9694 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.1220 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 87.2727 | 80.0000 | 96.0000 | 90.9747 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 87.2727 | 80.0000 | 96.0000 | 91.1348 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 71.4286 | 62.5000 | 83.3333 | 96.5714 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.1154 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.0594 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 86.9565 | 80.0000 | 95.2381 | 94.6835 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 94.6188 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.4712 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |