PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39201-39250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0841 | 86.1111 | 96.6667 | 86.3014 | 31 | 5 | 29 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 31.1675 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | homalt | 99.7971 | 99.6398 | 99.9548 | 70.1295 | 2213 | 8 | 2213 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | homalt | 99.6981 | 99.4729 | 99.9244 | 76.2016 | 1321 | 7 | 1321 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | homalt | 99.6487 | 99.4159 | 99.8826 | 86.0259 | 851 | 5 | 851 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | homalt | 99.6791 | 99.4664 | 99.8928 | 87.0650 | 932 | 5 | 932 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2424 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.1495 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3441 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.2551 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.7541 | 96.2121 | 99.3464 | 87.0886 | 127 | 5 | 152 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7471 | 99.5042 | 99.9911 | 53.7923 | 11240 | 56 | 11209 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.9077 | 80.6452 | 99.0566 | 99.9183 | 100 | 24 | 105 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.1683 | 75.0000 | 93.3333 | 99.9306 | 12 | 4 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | homalt | 98.1481 | 96.9512 | 99.3750 | 85.5856 | 159 | 5 | 159 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.6667 | 94.6043 | 0 | 0 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.4545 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 96.4286 | 87.8261 | 0 | 0 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.4444 | 91.2195 | 0 | 0 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 96.2963 | 88.0000 | 0 | 0 | 26 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 97.5309 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 95.6522 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7377 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.1929 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8254 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 98.0769 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.1818 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.8070 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.0588 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 95.6284 | 0 | 0 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.2381 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 94.0217 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 94.0171 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.6679 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.1929 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 95.6522 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 88.8889 | 94.6108 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 94.5783 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.0000 | 93.9394 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 94.6809 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 96.8750 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||