PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38551-38600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 98.9796 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 50.0000 | 96.0784 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 96.1538 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 99.2424 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 99.3671 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 99.1071 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.9583 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.8235 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.7013 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.9011 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 99.3671 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 99.1071 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 99.2366 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 98.9011 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.2759 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.2143 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 63.1380 | 46.2604 | 99.4048 | 57.0332 | 167 | 194 | 167 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | homalt | 98.9595 | 98.1651 | 99.7669 | 92.8560 | 428 | 8 | 428 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 52.4862 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 57.1429 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 88.8889 | 88.8889 | 93.8776 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | homalt | 98.4293 | 97.4093 | 99.4709 | 94.3430 | 188 | 5 | 188 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | het | 91.1392 | 84.1121 | 99.4475 | 61.8143 | 180 | 34 | 180 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | homalt | 95.3917 | 91.5929 | 99.5192 | 34.3849 | 207 | 19 | 207 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.1905 | 66.6667 | 88.8889 | 99.7817 | 8 | 4 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 71.4286 | 58.8235 | 90.9091 | 99.7884 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.8848 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 94.5946 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |