PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38501-38550 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | het | 0.0000 | 0.0000 | 99.9994 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 90.1840 | 1 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4127 | 100.0000 | 96.8750 | 65.5914 | 2 | 0 | 31 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 98.2818 | 6 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | hetalt | 99.8088 | 100.0000 | 99.6183 | 63.7119 | 29 | 0 | 261 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | hetalt | 99.8165 | 100.0000 | 99.6337 | 65.9176 | 30 | 0 | 272 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | homalt | 99.8833 | 100.0000 | 99.7669 | 92.9359 | 436 | 0 | 428 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | het | 0.0000 | 0.0000 | 99.9990 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9907 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9674 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3289 | 100.0000 | 98.6667 | 70.3557 | 5 | 0 | 74 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8435 | 99.7712 | 99.9160 | 32.7499 | 1308 | 3 | 1190 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 74.1036 | 16 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | hetalt | 99.4872 | 100.0000 | 98.9796 | 72.3944 | 30 | 0 | 97 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | hetalt | 99.5392 | 100.0000 | 99.0826 | 73.6715 | 30 | 0 | 108 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 76.1905 | 20 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 77.3885 | 20 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | hetalt | 99.3103 | 100.0000 | 98.6301 | 77.1875 | 20 | 0 | 72 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 88.5714 | 4 | 0 | 15 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | hetalt | 97.4359 | 100.0000 | 95.0000 | 87.7301 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.8203 | 57.4281 | 99.4845 | 34.4595 | 719 | 533 | 193 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 85.9670 | 76.8000 | 97.6190 | 25.0000 | 96 | 29 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | hetalt | 75.4805 | 61.6000 | 97.4359 | 93.3219 | 77 | 48 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | * | 95.9637 | 93.4211 | 98.6486 | 48.6111 | 71 | 5 | 73 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | homalt | 98.5075 | 100.0000 | 97.0588 | 53.4247 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C1_5 | * | * | 89.4410 | 90.0000 | 88.8889 | 97.6804 | 9 | 1 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C1_5 | * | het | 88.1890 | 88.8889 | 87.5000 | 96.5368 | 8 | 1 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | het | 93.3333 | 100.0000 | 87.5000 | 97.5831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 99.5050 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.3871 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |