PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 78.3900 | 64.4775 | 99.9582 | 58.4621 | 2425 | 1336 | 2392 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.8055 | 92.0455 | 99.8858 | 53.9432 | 891 | 77 | 875 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.2006 | 78.9671 | 99.8794 | 42.7486 | 841 | 224 | 828 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.1591 | 94.0299 | 98.3871 | 85.4460 | 63 | 4 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.3415 | 30.3191 | 98.2759 | 68.9840 | 57 | 131 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.1992 | 56.8627 | 98.8636 | 64.0816 | 87 | 66 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.8896 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.8828 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 61.3398 | 44.4444 | 98.9583 | 52.7094 | 96 | 120 | 95 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 73.1183 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 76.8519 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 77.2727 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | homalt | 76.9231 | 66.6667 | 90.9091 | 80.3571 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | homalt | 76.9231 | 66.6667 | 90.9091 | 83.8235 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 76.9231 | 66.6667 | 90.9091 | 84.5070 | 10 | 5 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 87.5000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 66.6667 | 57.1429 | 80.0000 | 90.0000 | 4 | 3 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 71.4286 | 62.5000 | 83.3333 | 88.8889 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_siren | homalt | 81.8182 | 70.0000 | 98.4375 | 70.2326 | 63 | 27 | 63 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6524 | 97.4079 | 99.9291 | 42.5020 | 1428 | 38 | 1410 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1183 | 98.3683 | 99.8798 | 44.5703 | 844 | 14 | 831 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.7317 | 51.4286 | 95.0000 | 93.4641 | 18 | 17 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.9091 | 100.0000 | 83.3333 | 97.8947 | 8 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | * | 94.4785 | 90.5882 | 98.7179 | 44.6809 | 77 | 8 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | het | 95.3488 | 93.1818 | 97.6190 | 48.7805 | 41 | 3 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.9070 | 97.9644 | 99.8679 | 59.9259 | 770 | 16 | 756 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9411 | 98.0952 | 99.8016 | 65.5738 | 515 | 10 | 503 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2739 | 87.8049 | 97.2222 | 88.5350 | 36 | 5 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0574 | 87.2068 | 99.7494 | 78.9889 | 409 | 60 | 398 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7441 | 95.6423 | 99.9404 | 50.0892 | 1690 | 77 | 1677 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | * | 91.8292 | 86.1111 | 98.3607 | 51.2000 | 62 | 10 | 60 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | het | 90.3226 | 84.8485 | 96.5517 | 55.3846 | 28 | 5 | 28 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | hetalt | 76.3636 | 77.7778 | 75.0000 | 96.9697 | 7 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 97.0760 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | hetalt | 75.9494 | 65.2174 | 90.9091 | 96.8300 | 15 | 8 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 93.0233 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.4912 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 99.3421 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 50.0000 | 98.7097 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 50.0000 | 98.4848 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||