PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38101-38150 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7115 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.3966 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.6636 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9583 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3871 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.6526 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.5806 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.4359 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5709 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8756 | 99.8135 | 99.9378 | 52.0442 | 1606 | 3 | 1606 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7311 | 99.4891 | 99.9743 | 79.8583 | 3895 | 20 | 3895 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7825 | 99.5948 | 99.9709 | 62.1467 | 3441 | 14 | 3441 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7838 | 73.8095 | 96.8750 | 97.3222 | 31 | 11 | 31 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.9310 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7876 | 99.5850 | 99.9909 | 55.4353 | 11038 | 46 | 11035 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 45.8022 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5902 | 99.2647 | 99.9178 | 64.5481 | 1215 | 9 | 1215 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.0000 | 100.0000 | 92.3077 | 90.2256 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8225 | 99.7340 | 99.9112 | 51.8392 | 1125 | 3 | 1125 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7512 | 99.5449 | 99.9585 | 78.7236 | 2406 | 11 | 2406 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0000 | 100.0000 | 92.3077 | 90.2256 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8722 | 99.7607 | 99.9840 | 43.9807 | 6253 | 15 | 6253 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.3026 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.8997 | 99.9749 | 35.9073 | 3983 | 4 | 3983 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.6183 | 99.8088 | 66.4313 | 522 | 2 | 522 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6310 | 99.3209 | 99.9431 | 59.6415 | 1755 | 12 | 1755 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 96.7185 | 18 | 8 | 18 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.4654 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7572 | 99.5298 | 99.9857 | 59.9128 | 6986 | 33 | 6983 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9871 | 100.0000 | 99.9743 | 59.4747 | 3887 | 0 | 3887 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.5556 | 69.0476 | 96.6667 | 91.1504 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.6316 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 76.4706 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 78.9474 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.5781 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.2249 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.5680 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.2143 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5839 | 99.4460 | 99.7222 | 61.9048 | 359 | 2 | 359 | 1 | 1 | 100.0000 | |