PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37951-38000 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.9324 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002compoundhet | hetalt | 99.6512 | 99.4200 | 99.8834 | 22.4231 | 857 | 5 | 857 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 96.3504 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | func_cds | het | 99.2974 | 99.0654 | 99.5305 | 45.8015 | 212 | 2 | 212 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 36.4146 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.1418 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3392 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.2340 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4369 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.0712 | 90.9871 | 99.5392 | 72.7044 | 212 | 21 | 216 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 76.9517 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.8678 | 82.2581 | 99.0291 | 99.9257 | 102 | 22 | 102 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 86.4432 | 77.0115 | 98.5075 | 99.9051 | 67 | 20 | 66 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.5175 | 97.1831 | 99.8891 | 27.3167 | 897 | 26 | 901 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | hetalt | 90.3728 | 84.8485 | 96.6667 | 91.4040 | 28 | 5 | 29 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 93.6206 | 88.7097 | 99.1071 | 86.4571 | 110 | 14 | 111 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 93.2274 | 88.0000 | 99.1150 | 87.3884 | 110 | 15 | 112 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | homalt | 93.8776 | 92.0000 | 95.8333 | 97.2603 | 23 | 2 | 23 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_siren | hetalt | 93.3352 | 87.8543 | 99.5455 | 87.1345 | 217 | 30 | 219 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5302 | 93.3045 | 99.9868 | 25.2315 | 7553 | 542 | 7588 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3002 | 94.7561 | 99.9846 | 24.3136 | 6469 | 358 | 6477 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4989 | 93.2461 | 99.9869 | 27.4123 | 7621 | 552 | 7657 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3545 | 94.8591 | 99.9847 | 25.8525 | 6532 | 354 | 6544 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6124 | 99.6124 | 99.6124 | 80.3503 | 257 | 1 | 257 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 79.6546 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 80.5937 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5958 | 99.3548 | 99.8379 | 80.6765 | 616 | 4 | 616 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 84.1880 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.5696 | 99.4269 | 99.7126 | 82.3350 | 347 | 2 | 347 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.5873 | 99.4505 | 99.7245 | 83.3867 | 362 | 2 | 362 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.5962 | 99.4624 | 99.7305 | 83.3707 | 370 | 2 | 370 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 87.8187 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 84.8667 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 85.9155 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 85.8702 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | * | 99.6820 | 99.4560 | 99.9091 | 93.9277 | 1097 | 6 | 1099 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.8431 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | hetalt | 96.8362 | 93.8781 | 99.9869 | 24.0528 | 7652 | 499 | 7656 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9479 | 95.9924 | 99.9847 | 32.9893 | 6539 | 273 | 6556 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7719 | 97.7431 | 99.8227 | 66.2275 | 563 | 13 | 563 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7326 | 99.7326 | 99.7326 | 58.2589 | 373 | 1 | 373 | 1 | 0 | 0.0000 | |