PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3701-3750 / 86044 show all
gduggal-snapfbSNPtvmap_l100_m2_e0*
97.5647
98.0226
97.1111
71.6649
2453849524539730232
31.7808
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.8273
81.4433
90.7101
41.4412
28446487128730664
90.9589
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
83.4657
81.8519
85.1445
71.6183
41909294184730709
97.1233
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
56.9927
87.3563
42.2925
67.1172
53277535730725
99.3151
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
41.0817
36.4955
46.9862
60.8362
6541138647730671
91.9178
ciseli-customSNPtvmap_l150_m0_e0*
72.3723
66.6267
79.2023
86.0382
278113932780730179
24.5205
anovak-vgSNP*map_l250_m0_e0het
70.3786
80.8101
62.3323
96.0946
12172891208730157
21.5068
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.1322
81.9681
80.3133
62.9774
29826562974729725
99.4513
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.7995
27.2556
44.4783
55.2641
5801548584729693
95.0617
ciseli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
68.7950
62.4006
76.6496
65.6998
243314662393729415
56.9273
ciseli-customINDELD6_15HG002complexvarhet
69.9812
65.9506
74.5366
56.4774
205710622131728196
26.9231
qzeng-customSNP*map_l150_m2_e0*
81.2952
70.0678
96.8072
87.0114
22318953422073728620
85.1648
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.3645
86.4174
80.5198
60.1495
27744363005727352
48.4182
mlin-fermikitINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
64.4614
84.9116
51.9498
59.0528
816145786727719
98.8996
gduggal-bwavardSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8048
97.6528
95.9714
65.8504
1743241917319727195
26.8226
gduggal-bwavardSNPtvmap_l150_m0_e0het
87.7034
98.1358
79.2759
87.9471
279053278172717
2.3384
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
28.4651
25.7208
31.8650
61.9879
339979340727723
99.4498
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
jpowers-varprowlSNP*map_l150_m1_e0*
97.1070
96.6121
97.6070
79.3678
29572103729572725231
31.8621
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
47.8156
40.9091
57.5278
84.8321
882127498272538
5.2414
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.0836
24.4547
56.2198
65.7568
9532944931725695
95.8621
gduggal-bwafbINDELD1_5*homalt
98.9426
99.3562
98.5324
61.7935
4861131548609724697
96.2707
anovak-vgSNPtilowcmp_SimpleRepeat_diTR_11to50*
90.7748
94.4594
87.3670
66.7807
45692685007724345
47.6519
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.4634
56.6917
58.2564
53.1385
7545761009723533
73.7206
cchapple-customSNP*map_l125_m0_e0*
96.1705
96.0794
96.2618
77.2988
1862576018618723176
24.3430
egarrison-hhgaINDELI1_5**
99.2965
99.0761
99.5179
56.5802
1492721392149236723442
61.1342
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.9829
82.3708
94.4157
36.4127
5691121812224723701
96.9571
cchapple-customSNP*map_l125_m0_e0het
95.3778
96.3598
94.4157
80.7050
1220346112207722175
24.2382
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4455
88.5350
53.1777
65.7562
834108820722692
95.8449
gduggal-snapfbSNPtvmap_l100_m1_e0*
97.5300
97.9838
97.0805
69.8683
2400749424008722232
32.1330
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
91.5334
97.5261
86.2345
56.9835
4573116452372238
5.2632
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
43.9535
83.9779
29.7665
62.1084
30458306722718
99.4460
jmaeng-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8577
98.4881
99.2301
73.8561
93021142892930721622
86.2691
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
10.6794
9.1448
12.8329
47.1191
1081073106720717
99.5833
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.7862
96.4642
95.1177
63.6639
619322714027720615
85.4167
bgallagher-sentieonSNP*map_siren*
99.5992
99.6902
99.5084
55.5562
145775453145752720102
14.1667
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
64.6970
88.5882
50.9550
49.1325
75397747719658
91.5160
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.7663
68.9189
12.2249
46.1133
10246100718715
99.5822
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.1017
89.1985
95.2002
47.3849
13188159714241718698
97.2145
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
jpowers-varprowlSNP*map_l100_m0_e0het
96.3156
96.0340
96.5990
77.1422
2036484120365717214
29.8466
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8782
93.0607
96.7682
51.4476
20706154421469717639
89.1213
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.6454
99.5085
72.1445
74.1800
18229185771713
1.8131
qzeng-customSNP*map_l150_m1_e0*
80.7203
69.2737
96.6985
86.4603
21204940520971716612
85.4749
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0845
29.5144
35.1449
62.1659
389929388716700
97.7654
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0359
80.0905
20.0224
83.6832
1774417971542
5.8741
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.7819
78.2631
81.3608
56.9182
31188663121715658
92.0280
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566