PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36951-37000 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9336 | 98.0047 | 99.8804 | 84.7751 | 835 | 17 | 835 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6953 | 99.4211 | 99.9709 | 62.6075 | 3435 | 20 | 3435 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8537 | 99.7443 | 99.9634 | 30.7478 | 2731 | 7 | 2731 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5490 | 99.1830 | 99.9177 | 59.0909 | 1214 | 10 | 1214 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7781 | 99.6454 | 99.9111 | 42.4847 | 1124 | 4 | 1124 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8152 | 99.6720 | 99.9589 | 50.5792 | 2431 | 8 | 2431 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7464 | 99.5570 | 99.9365 | 52.5475 | 1573 | 7 | 1573 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7097 | 99.4621 | 99.9584 | 72.8647 | 2404 | 13 | 2404 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2293 | 98.4908 | 99.9790 | 69.4708 | 4764 | 73 | 4764 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9572 | 97.9670 | 99.9676 | 71.7050 | 3084 | 64 | 3084 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4684 | 98.9668 | 99.9751 | 45.9140 | 4023 | 42 | 4023 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5113 | 99.0527 | 99.9742 | 29.4879 | 3869 | 37 | 3868 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 26.8443 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.0980 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 48.8561 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8777 | 97.8947 | 99.8807 | 50.7349 | 837 | 18 | 837 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6028 | 97.4359 | 99.7980 | 86.4421 | 494 | 13 | 494 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5976 | 97.4414 | 99.7817 | 85.6785 | 457 | 12 | 457 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.4634 | 98.9987 | 99.9326 | 79.6378 | 1483 | 15 | 1483 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6595 | 99.3775 | 99.9431 | 60.9816 | 1756 | 11 | 1756 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3671 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.1579 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 39.8396 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5069 | 93.9394 | 99.2188 | 80.8096 | 124 | 8 | 127 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5679 | 99.2416 | 99.8964 | 30.1737 | 916 | 7 | 964 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | homalt | 89.3617 | 84.0000 | 95.4545 | 97.8744 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | homalt | 92.1569 | 86.2385 | 98.9474 | 95.6262 | 94 | 15 | 94 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | homalt | 92.0930 | 86.0870 | 99.0000 | 95.9920 | 99 | 16 | 99 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | homalt | 92.1659 | 86.2069 | 99.0099 | 96.0531 | 100 | 16 | 100 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | segdup | hetalt | 95.6238 | 92.3077 | 99.1870 | 94.8211 | 120 | 10 | 122 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 97.6190 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 96.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 97.8723 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||