PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36551-36600 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.1156 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7711 | 88.5057 | 97.4684 | 84.9810 | 77 | 10 | 77 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9615 | 90.9091 | 99.3921 | 58.2487 | 310 | 31 | 327 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.0984 | 91.2587 | 99.2754 | 54.6053 | 261 | 25 | 274 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.2125 | 91.3158 | 99.4565 | 63.2368 | 347 | 33 | 366 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3796 | 89.9642 | 99.2509 | 66.4573 | 251 | 28 | 265 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4088 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.5631 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.5000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.4365 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7186 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7828 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 97.0874 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 97.1014 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.7578 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8281 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m2_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8930 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.9209 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.6429 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 41.5094 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8071 | 93.8433 | 99.9643 | 38.7051 | 5533 | 363 | 5593 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6764 | 99.6119 | 99.7409 | 78.2474 | 770 | 3 | 770 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9639 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.2523 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.3667 | 93.0278 | 99.9543 | 26.6834 | 4323 | 324 | 4375 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0766 | 94.3658 | 99.9478 | 25.1564 | 3802 | 227 | 3827 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3303 | 92.9589 | 99.9555 | 30.3660 | 4436 | 336 | 4488 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8071 | 93.8433 | 99.9643 | 38.7051 | 5533 | 363 | 5593 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.8244 | 61.6505 | 98.4615 | 58.8608 | 127 | 79 | 128 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7450 | 99.6361 | 99.8542 | 72.0228 | 1369 | 5 | 1370 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.5572 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.7410 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.8503 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 94.5736 | 92.4242 | 96.8254 | 96.9163 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7250 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 94.5736 | 92.4242 | 96.8254 | 97.0199 | 61 | 5 | 61 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.7598 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.7775 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0999 | 94.4231 | 99.9328 | 43.7027 | 2946 | 174 | 2975 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9665 | 98.7603 | 99.1736 | 69.4830 | 239 | 3 | 240 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 70.3390 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6530 | 93.6073 | 99.9036 | 32.9997 | 2050 | 140 | 2073 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5585 | 93.4500 | 99.8809 | 40.1426 | 1655 | 116 | 1677 | 2 | 2 | 100.0000 | |