PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36251-36300 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.2791 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.4689 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 90.3226 | 93.3333 | 87.5000 | 96.6805 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.5926 | 92.5926 | 92.5926 | 96.3215 | 25 | 2 | 25 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7697 | 99.5913 | 99.9487 | 76.0057 | 3899 | 16 | 3899 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.0196 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.0854 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0132 | 97.3684 | 98.6667 | 91.3345 | 148 | 4 | 148 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1496 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7545 | 99.6496 | 99.8596 | 26.6735 | 1422 | 5 | 1422 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | homalt | 69.8436 | 53.6851 | 99.9171 | 79.2054 | 2411 | 2080 | 2411 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | ti | map_siren | hetalt | 87.6190 | 80.7018 | 95.8333 | 80.9524 | 46 | 11 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6646 | 99.3826 | 99.9483 | 59.5457 | 3863 | 24 | 3863 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.0884 | 69.6340 | 99.9682 | 68.5726 | 6297 | 2746 | 6297 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | homalt | 82.4340 | 70.1324 | 99.9691 | 70.6315 | 6462 | 2752 | 6462 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.5549 | 70.3075 | 99.9694 | 70.5594 | 6540 | 2762 | 6540 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | homalt | 75.5546 | 60.7338 | 99.9438 | 75.6613 | 3559 | 2301 | 3559 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | homalt | 76.1523 | 61.5091 | 99.9460 | 77.4235 | 3701 | 2316 | 3701 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.2777 | 61.6727 | 99.9466 | 77.3753 | 3746 | 2328 | 3746 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | func_cds | * | 97.5940 | 95.7303 | 99.5316 | 35.2049 | 426 | 19 | 425 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | func_cds | het | 97.8678 | 96.7290 | 99.0338 | 42.5000 | 207 | 7 | 205 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | hetalt | 82.5149 | 73.8095 | 93.5484 | 92.2693 | 31 | 11 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 60.0000 | 92.5373 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 2 | 2 | 100.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.0476 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.1329 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 33.3333 | 99.1404 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 99.1803 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 99.2481 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 99.1189 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 99.1266 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 99.2629 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 33.3333 | 99.4286 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 66.6667 | 96.0265 | 0 | 0 | 4 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.1701 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 95.9596 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | * | 52.6316 | 41.6667 | 71.4286 | 46.1538 | 5 | 7 | 5 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.2218 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 73.6842 | 70.0000 | 77.7778 | 99.4813 | 7 | 3 | 7 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.0149 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 18.7500 | 11.1111 | 60.0000 | 95.6522 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |