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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
36201-36250 / 86044 show all
cchapple-customINDELD6_15map_l250_m2_e1*
95.8333
100.0000
92.0000
95.4710
2202320
0.0000
cchapple-customINDELD6_15map_l250_m2_e1het
94.4444
100.0000
89.4737
95.7207
1401720
0.0000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
80.0000
100.0000
66.6667
86.9565
40422
100.0000
cchapple-customINDELI16_PLUSmap_sirenhomalt
95.4545
100.0000
91.3043
92.0690
2102122
100.0000
ckim-gatkINDELI16_PLUSHG002complexvarhetalt
96.6468
94.0299
99.4135
66.8932
3152033922
100.0000
ckim-gatkINDELI16_PLUSHG002compoundhethetalt
95.8494
92.1166
99.8975
44.7808
1928165195022
100.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.1564
94.7368
97.6190
90.9968
9058220
0.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1538
100.0000
92.5926
92.7224
2502522
100.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.3739
93.3105
99.6454
63.1854
5443956222
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4002
93.3232
99.6870
67.8894
6154463722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.6744
97.2222
98.1308
89.4789
105310520
0.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9223
96.9697
96.8750
89.3864
6426220
0.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4002
93.3232
99.6870
67.8894
6154463722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
93.5687
91.4894
95.7447
81.3492
4344521
50.0000
ckim-gatkINDELI16_PLUSmap_l100_m2_e0het
91.8919
94.4444
89.4737
95.6522
1711720
0.0000
ckim-gatkINDELI16_PLUSmap_l100_m2_e1het
91.8919
94.4444
89.4737
95.6720
1711720
0.0000
ckim-gatkINDELI16_PLUSmap_l125_m2_e0*
90.3226
93.3333
87.5000
97.2556
1411420
0.0000
ckim-gatkINDELI16_PLUSmap_l125_m2_e1*
90.3226
93.3333
87.5000
97.2603
1411420
0.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6563
770377020
0.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1468
92.6189
99.9541
23.6736
4304343435722
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8132
93.8694
99.9475
22.1609
3782247380922
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0708
92.4769
99.9552
27.1601
4413359446622
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
78.7206
65.5340
98.5507
56.6038
1357113621
50.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
95.3668
91.8216
99.1968
76.6417
2472224721
50.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-gatkINDELI1_5map_l150_m0_e0homalt
98.5294
100.0000
97.1014
89.4009
6706722
100.0000
ckim-gatkINDELI1_5map_l250_m1_e0homalt
97.7778
100.0000
95.6522
94.3696
4404422
100.0000
ckim-gatkINDELI1_5map_l250_m2_e0homalt
97.8261
100.0000
95.7447
95.1696
4504522
100.0000
ckim-gatkINDELI1_5map_l250_m2_e1homalt
97.8723
100.0000
95.8333
95.1759
4604622
100.0000
ckim-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-gatkINDELI6_15HG002compoundhethetalt
95.9864
92.3041
99.9748
28.2337
7880657792122
100.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
83.9506
73.9130
97.1429
57.8313
68246821
50.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.2418
98.9224
99.5633
72.5090
459545620
0.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-gatkINDELI6_15map_l100_m0_e0*
92.3077
90.9091
93.7500
93.5223
3033021
50.0000
ckim-gatkINDELI6_15map_l100_m0_e0het
91.4286
94.1176
88.8889
94.6903
1611621
50.0000
ckim-gatkINDELI6_15map_l125_m0_e0*
86.6667
86.6667
86.6667
96.0212
1321321
50.0000
ckim-gatkINDELI6_15map_l125_m0_e0het
84.2105
88.8889
80.0000
96.2264
81821
50.0000
ckim-gatkINDELI6_15map_l150_m1_e0*
92.0000
92.0000
92.0000
96.0000
2322321
50.0000