PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
35901-35950 / 86044 show all
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_diTR_51to200*
79.4521
69.0476
93.5484
96.0710
29132922
100.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8276
99.7048
99.9507
44.3071
405312405322
100.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6764
99.4350
99.9189
28.6252
246414246420
0.0000
ndellapenna-hhgaSNPtimap_l250_m0_e0homalt
98.9619
98.3945
99.5360
89.9276
429742922
100.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3407
98.9059
99.7792
68.3217
9041090420
0.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6190
99.6190
99.6190
68.6754
523252321
50.0000
ndellapenna-hhgaSNPtvmap_l150_m0_e0homalt
99.4329
99.0211
99.8481
74.3625
131513131521
50.0000
ndellapenna-hhgaSNPtvmap_l250_m1_e0homalt
99.2958
98.8318
99.7642
85.6708
8461084622
100.0000
ndellapenna-hhgaSNPtvmap_l250_m2_e0homalt
99.3569
98.9328
99.7847
86.9321
9271092722
100.0000
ndellapenna-hhgaSNPtvmap_l250_m2_e1homalt
99.3631
98.9429
99.7868
87.0245
9361093622
100.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
78.0161
64.7448
98.1308
54.0773
176396010522
100.0000
qzeng-customINDEL*tech_badpromotershet
95.0546
94.8718
95.2381
45.4545
3724021
50.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
0.0000
0.0000
95.0000
00020
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
97.0149
00020
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
33.3333
89.6552
00120
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
33.3333
97.0874
00120
0.0000
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
33.3333
94.4444
00120
0.0000
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
0.0000
0.0000
33.3333
91.4286
00120
0.0000
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
93.5484
00020
0.0000
ltrigg-rtg2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7370
99.4951
99.9801
43.3493
10051511004521
50.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.8571
100.0000
86.6667
86.3636
1201322
100.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
100.0000
86.6667
86.3636
1201322
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200*
67.5768
56.2500
84.6154
95.9248
971120
0.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200het
60.0000
50.0000
75.0000
96.8627
55620
0.0000
ltrigg-rtg2SNPtitech_badpromoters*
98.8372
100.0000
97.7011
47.9042
8508520
0.0000
ltrigg-rtg2SNPtitech_badpromotershet
97.7778
100.0000
95.6522
52.0833
4404420
0.0000
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7866
99.5939
99.9801
57.0879
10056411003622
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5837
99.2071
99.9631
70.9548
538043541920
0.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200*
75.7426
65.3846
90.0000
93.5691
1791821
50.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200het
72.8477
64.7059
83.3333
95.1613
1161021
50.0000
ltrigg-rtg2SNPtvmap_l150_m1_e0homalt
99.7842
99.6199
99.9492
67.6001
393115393221
50.0000
ltrigg-rtg2SNPtvmap_l150_m2_e0homalt
99.7915
99.6326
99.9509
70.3193
406815406921
50.0000
ltrigg-rtg2SNPtvmap_l150_m2_e1homalt
99.7941
99.6372
99.9515
70.3259
411915412321
50.0000
ltrigg-rtg2SNPtvmap_l250_m0_e0*
94.4251
89.6732
99.7089
83.7895
6867968520
0.0000
ltrigg-rtg2SNPtvmap_l250_m0_e0het
92.6096
86.5385
99.5968
76.3020
4957749420
0.0000
ltrigg-rtg2SNPtvmap_l250_m1_e0*
96.5840
93.4643
99.9191
77.8524
2474173247120
0.0000
ltrigg-rtg2SNPtvmap_l250_m1_e0het
95.0732
90.7107
99.8765
72.2650
1621166161820
0.0000
ltrigg-rtg2SNPtvtech_badpromoters*
98.6301
100.0000
97.2973
60.0000
7207220
0.0000
ltrigg-rtg2SNPtvtech_badpromotershet
97.0588
100.0000
94.2857
65.6863
3303320
0.0000
mlin-fermikitINDEL*func_cdshomalt
99.5595
100.0000
99.1228
33.5277
226022622
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
66.6667
56.2500
81.8182
99.8908
97922
100.0000
mlin-fermikitINDEL*map_sirenhetalt
76.4268
62.3482
98.7179
84.3687
1549315421
50.0000
mlin-fermikitINDEL*tech_badpromotershomalt
97.0588
100.0000
94.2857
54.5455
3303322
100.0000
mlin-fermikitINDELD16_PLUSHG002complexvarhetalt
85.1780
74.4939
99.4398
52.4000
1846335522
100.0000
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
68.6099
52.3077
99.6743
49.0879
51046561221
50.0000
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
98.6711
20220
0.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
98.6532
20220
0.0000