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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
35501-35550 / 86044 show all
dgrover-gatkINDELI6_15map_l125_m2_e1*
93.2039
90.5660
96.0000
93.1319
4854821
50.0000
dgrover-gatkINDELI6_15map_l125_m2_e1het
91.5254
90.0000
93.1034
93.1442
2732721
50.0000
dgrover-gatkINDELI6_15map_sirenhet
96.7972
95.1049
98.5507
86.9194
136713621
50.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
dgrover-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.6774
154315422
100.0000
dgrover-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.4026
7917922
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.9405
96.8326
99.0741
91.2409
214721422
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.0132
97.3684
98.6667
91.5636
148414822
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9016
99.9508
45.9204
40614406121
50.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkSNPtimap_l250_m0_e0homalt
98.7283
97.9358
99.5338
91.1982
427942721
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
84.4720
80.0000
89.4737
99.9555
1641722
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.3504
1201422
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
93.6508
89.3939
98.3333
77.6536
1181411821
50.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
80.0000
75.0000
85.7143
99.8799
1241220
0.0000
egarrison-hhgaINDEL*map_l100_m1_e0hetalt
82.7545
71.7742
97.7011
88.8031
89358521
50.0000
egarrison-hhgaINDEL*map_l100_m2_e0hetalt
82.9138
72.0000
97.7273
89.6104
90358621
50.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
94.0154
89.1967
99.3846
57.7373
3223932320
0.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
55.2147
41.6667
81.8182
76.5957
57921
50.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
64.0000
53.3333
80.0000
81.4815
87821
50.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
75.3247
63.0435
93.5484
55.0725
29172922
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
80.7692
87.5000
75.0000
75.0000
71622
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.1445
83.7838
95.2381
81.2500
3164022
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
76.2995
61.9145
99.3921
30.0000
30418732722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
54.0000
38.0282
93.1034
47.2727
27442722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9528
97.9466
99.9799
52.0162
9969209997021
50.0000
ckim-isaacINDELD1_5map_l125_m1_e0hetalt
73.2558
69.2308
77.7778
95.6311
94722
100.0000
ckim-isaacINDELD1_5map_l125_m2_e0hetalt
72.7273
66.6667
80.0000
95.9514
105822
100.0000
ckim-isaacINDELD1_5map_l125_m2_e1hetalt
72.7273
66.6667
80.0000
96.0630
105822
100.0000
ckim-isaacINDELD1_5map_l250_m1_e0*
64.8438
48.5380
97.6471
96.7779
83888322
100.0000
ckim-isaacINDELD1_5map_l250_m1_e0het
70.1405
54.9550
96.9231
97.0865
61506322
100.0000
ckim-isaacINDELD1_5map_l250_m2_e0*
65.2174
48.9130
97.8261
96.9405
90949022
100.0000
ckim-isaacINDELD1_5map_l250_m2_e0het
69.8630
54.5455
97.1429
97.2167
66556822
100.0000
ckim-isaacINDELD1_5map_l250_m2_e1*
64.9819
48.6486
97.8261
97.0101
90959022
100.0000
ckim-isaacINDELD1_5map_l250_m2_e1het
69.4952
54.0984
97.1429
97.2741
66566822
100.0000
ckim-isaacINDELD1_5map_sirenhomalt
85.4065
74.6575
99.7712
71.3349
87229687221
50.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
83.1169
74.4186
94.1176
57.5000
32113221
50.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
80.1478
69.6970
94.2857
75.1773
23103321
50.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
79.1201
65.5963
99.6683
30.7692
57230060120
0.0000
ckim-isaacINDELD6_15map_l125_m1_e0*
61.6279
45.2991
96.3636
90.1434
53645322
100.0000
ckim-isaacINDELD6_15map_l125_m2_e0*
60.1093
43.6508
96.4912
90.7015
55715522
100.0000
ckim-isaacINDELD6_15map_l125_m2_e1*
59.4595
42.9688
96.4912
90.9236
55735522
100.0000
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
64.6154
48.8372
95.4545
66.4122
42444222
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
67.0732
55.5556
84.6154
78.3333
1081122
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
78.7919
68.5714
92.5926
64.4737
24112522
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
84.3750
77.1429
93.1034
76.8000
2782721
50.0000