PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3501-3550 / 86044 show all
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1906
99.8023
98.5863
61.2684
555211105551079646
5.7789
ckim-dragenSNP*segduphet
97.6498
99.7863
95.6029
93.5624
1728037172857955
0.6289
jmaeng-gatkSNP*map_l125_m1_e0*
84.2085
74.0000
97.6843
84.3364
33542117853353679554
6.7925
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
55.8170
81.7294
42.3803
38.8099
586131584794776
97.7330
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
93.6596
95.7079
91.6972
82.3440
8741392876979475
9.4458
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
93.6596
95.7079
91.6972
82.3440
8741392876979475
9.4458
gduggal-bwavardINDEL*map_siren*
91.0727
92.5911
89.6032
84.7790
68615496843794423
53.2746
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
38.0210
46.1837
32.3103
83.9205
3574163797948
1.0076
ghariani-varprowlSNP*map_l125_m0_e0*
97.0458
98.1171
95.9976
79.8507
1902036519020793172
21.6898
ckim-dragenSNP*map_l150_m2_e1*
98.2286
98.8948
97.5714
78.5708
318543563186079396
12.1059
jmaeng-gatkSNP*map_l125_m1_e0het
88.1536
81.0158
96.6706
86.7253
2300253902299679251
6.4394
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.0248
95.3430
92.7426
84.9164
1029850310121792175
22.0960
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.9844
91.6684
94.3387
81.8623
13357121413181791134
16.9406
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.9844
91.6684
94.3387
81.8623
13357121413181791134
16.9406
gduggal-bwafbSNP*map_l100_m2_e0*
99.0302
99.1280
98.9327
69.1496
7331964573321791163
20.6068
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7884
98.3155
99.2658
69.8244
928581591106946791672
84.9558
ghariani-varprowlSNPtvmap_l100_m2_e0het
97.2146
99.3218
95.1950
76.6930
156701071567179198
12.3894
gduggal-snapvardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
26.8946
89.0519
0029179171
8.9760
gduggal-snapfbSNP*map_l125_m0_e0het
95.0102
96.1466
93.9004
73.7575
1217648812177791378
47.7876
ghariani-varprowlINDELI6_15HG002complexvarhet
82.0261
92.4841
73.6930
59.9920
21781772213790772
97.7215
ckim-dragenSNP*map_l100_m0_e0*
98.2840
98.9495
97.6275
70.9502
324963453250879091
11.5190
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.9189
77.3944
78.4506
71.4753
28048192876790545
68.9873
gduggal-bwavardSNPtimap_l250_m2_e1*
91.4742
97.4586
86.1821
92.2577
4947129492178928
3.5488
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.1889
88.8889
45.4986
84.0583
640806577877
0.8895
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.1919
91.6667
60.9150
62.8898
12211111225786754
95.9288
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
56.7644
80.9840
43.6963
58.5880
609143610786670
85.2417
gduggal-bwavardINDEL*map_sirenhet
90.9729
98.0035
84.8835
87.6032
4418904408785417
53.1210
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
67.5632
66.2900
68.8862
64.2887
17608951738785746
95.0318
rpoplin-dv42INDELI1_5**
99.2493
99.0230
99.4767
57.6844
1491921472149236785730
92.9936
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.1673
95.3799
89.1641
87.4464
65653186443783169
21.5837
gduggal-bwavardSNPtimap_l250_m2_e0*
91.4486
97.4840
86.1170
92.1941
4882126485778327
3.4483
eyeh-varpipeINDELD1_5HG002complexvar*
96.8177
96.1241
97.5214
52.6173
31447126830808783734
93.7420
eyeh-varpipeSNP*map_l150_m2_e1*
98.5942
99.6616
97.5494
78.9029
321011093116878330
3.8314
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
47.5210
44.6987
50.7237
69.1756
801991806783771
98.4674
ckim-gatkSNP*map_l125_m2_e1*
84.7700
74.7850
97.8324
85.1204
35300119023529478260
7.6726
gduggal-bwafbSNPtimap_siren*
99.3101
99.3981
99.2222
57.2359
9975160499755782145
18.5422
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4217
98.4028
98.4406
75.5838
4750077149303781332
42.5096
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7961
99.7741
97.8371
63.8462
35339803532878132
4.0973
gduggal-bwavardSNPtimap_l250_m2_e1het
88.2543
97.7266
80.4560
93.2754
322475321178022
2.8205
ckim-isaacINDELI1_5HG002complexvarhet
94.3344
93.1277
95.5727
50.4026
16939125016838780423
54.2308
ckim-dragenSNP*map_l150_m2_e0*
98.2382
98.8980
97.5872
78.4892
315013513150777994
12.0668
ciseli-customINDEL*map_l100_m2_e0*
70.8083
66.3417
75.9196
88.0680
245012432456779514
65.9820
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
48.6144
46.0379
51.4963
68.3816
825967826778725
93.1877
egarrison-hhgaSNPti**
99.9062
99.8498
99.9627
17.0848
208237931322082402778200
25.7069
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
46.2416
43.0804
49.9034
66.9082
7721020775778771
99.1003
jpowers-varprowlINDELI6_15HG002complexvarhet
76.9804
82.9299
71.8274
56.3262
19534021981777772
99.3565
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.2663
94.0755
92.4709
53.9758
95756039543777701
90.2188
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
57.0334
48.7504
68.7072
56.9745
173618251706777550
70.7851
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.5350
93.7209
89.4487
79.3835
62394186587777381
49.0347
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3667
99.3548
95.4567
60.8139
1632310616325777514
66.1519