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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
35401-35450 / 86044 show all
ckim-vqsrINDELI1_5map_l125_m0_e0homalt
99.1304
100.0000
98.2759
86.0744
114011421
50.0000
ckim-vqsrINDELI1_5map_l125_m1_e0homalt
99.5420
99.6942
99.3902
83.8741
326132621
50.0000
ckim-vqsrINDELI1_5map_l125_m2_e0homalt
99.5608
99.7067
99.4152
85.0850
340134021
50.0000
ckim-vqsrINDELI1_5map_l125_m2_e1homalt
99.5633
99.7085
99.4186
85.2740
342134221
50.0000
ckim-vqsrINDELI1_5map_l150_m1_e0homalt
99.2443
99.4949
98.9950
87.4921
197119721
50.0000
ckim-vqsrINDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.8950
200120021
50.0000
ckim-vqsrINDELI1_5map_l150_m2_e1homalt
99.2665
99.5098
99.0244
88.9488
203120321
50.0000
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
83.9506
73.9130
97.1429
57.8313
68246821
50.0000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-vqsrINDELI6_15map_sirenhomalt
98.3425
98.8889
97.8022
85.3462
8918921
50.0000
ckim-vqsrSNP**hetalt
97.4148
95.1780
99.7593
54.6645
8294282922
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
ckim-vqsrSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.0196
154315422
100.0000
ckim-vqsrSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
ckim-vqsrSNPti*hetalt
97.3638
95.1890
99.6403
53.2773
5542855422
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.7064
96.3801
99.0698
91.1230
213821322
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.6744
96.7105
98.6577
91.3873
147514722
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3604
98.8187
99.9081
42.3617
217526217522
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5138
99.1122
99.9186
36.8380
245622245521
50.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7975
99.7110
99.8843
36.2126
17255172622
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.4624
443044322
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.5038
96.4789
98.5507
46.9231
137513621
50.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
93.7037
95.8333
91.6667
76.6990
2312221
50.0000
dgrover-gatkINDELD6_15map_l125_m1_e0*
96.9697
95.7265
98.2456
91.4286
112511221
50.0000
dgrover-gatkINDELD6_15map_l125_m1_e0het
96.8750
96.8750
96.8750
92.8968
6226221
50.0000
dgrover-gatkINDELD6_15map_l125_m2_e0*
96.7742
95.2381
98.3607
91.6496
120612021
50.0000
dgrover-gatkINDELD6_15map_l125_m2_e0het
96.4539
95.7746
97.1429
92.9435
6836821
50.0000
dgrover-gatkINDELD6_15map_l125_m2_e1*
96.4143
94.5312
98.3740
91.7616
121712121
50.0000
dgrover-gatkINDELD6_15map_l125_m2_e1het
96.4539
95.7746
97.1429
93.0830
6836821
50.0000
dgrover-gatkINDELI16_PLUSHG002complexvarhetalt
97.8993
96.4179
99.4269
69.1424
3231234722
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.1564
94.7368
97.6190
90.9968
9058220
0.0000
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3738
95.1973
99.6522
66.4723
5552857322
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.4450
95.2959
99.6933
71.1249
6283165022
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9223
96.9697
96.8750
89.1892
6426220
0.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.4132
89.6552
97.5000
85.2399
7897822
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.2381
10122
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.2384
92.4812
98.1651
88.0482
1231010722
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.7596
92.3754
99.4012
59.5152
3152633222
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.0290
92.4528
97.7528
87.1573
9888722
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.0450
93.0070
99.2883
56.0250
2662027922
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0678
92.8947
99.4652
64.2789
3532737222
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.4450
95.2959
99.6933
71.1249
6283165022
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
95.7511
92.4731
99.2701
67.4197
2582127222
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
94.7122
93.6170
95.8333
81.2500
4434622
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
80.0000
100.0000
66.6667
90.1639
40422
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
99.2248
98.9691
99.4819
76.1286
384438421
50.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.8024
98.8095
98.7952
79.2500
166216421
50.0000
dgrover-gatkINDELI16_PLUSmap_l100_m0_e0*
91.6667
100.0000
84.6154
96.4578
1101120
0.0000