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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
35351-35400 / 86044 show all
ckim-vqsrINDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
87.4685
147114722
100.0000
ckim-vqsrINDELD1_5map_l125_m1_e0homalt
99.2826
99.1404
99.4253
85.7785
346334622
100.0000
ckim-vqsrINDELD1_5map_l125_m2_e0homalt
99.3122
99.1758
99.4490
86.4855
361336122
100.0000
ckim-vqsrINDELD1_5map_l125_m2_e1homalt
99.3271
99.1935
99.4609
86.4599
369336922
100.0000
ckim-vqsrINDELD1_5map_l150_m2_e1homalt
98.9899
98.7903
99.1903
88.6018
245324522
100.0000
ckim-vqsrINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5493
359035922
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6618
99.7743
99.5495
35.0877
442144222
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.5038
96.4789
98.5507
45.6693
137513621
50.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
93.7037
95.8333
91.6667
76.2376
2312221
50.0000
ckim-vqsrINDELD6_15map_l125_m0_e0*
96.8421
97.8723
95.8333
94.9045
4614620
0.0000
ckim-vqsrINDELD6_15map_l125_m0_e0het
94.9153
96.5517
93.3333
95.7204
2812820
0.0000
ckim-vqsrINDELD6_15map_l150_m0_e0*
96.9697
100.0000
94.1176
95.6242
3203220
0.0000
ckim-vqsrINDELD6_15map_l150_m0_e0het
95.2381
100.0000
90.9091
96.1938
2002020
0.0000
ckim-vqsrINDELI16_PLUSHG002complexvarhetalt
96.6468
94.0299
99.4135
66.8932
3152033922
100.0000
ckim-vqsrINDELI16_PLUSHG002compoundhethetalt
95.7976
92.0210
99.8974
44.8061
1926167194822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.8838
90.5263
97.5000
91.3886
8697820
0.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1538
100.0000
92.5926
92.7224
2502522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2821
93.1389
99.6448
63.2266
5434056122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7346
93.5185
98.0583
89.8322
101710120
0.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
93.6995
90.9091
96.6667
89.9833
6065820
0.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.1963
97.6190
98.7805
79.4486
164416221
50.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0het
91.8919
94.4444
89.4737
95.6522
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1het
91.8919
94.4444
89.4737
95.6720
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l125_m2_e0*
90.3226
93.3333
87.5000
97.2556
1411420
0.0000
ckim-vqsrINDELI16_PLUSmap_l125_m2_e1*
90.3226
93.3333
87.5000
97.2603
1411420
0.0000
ckim-vqsrINDELI16_PLUSmap_siren*
97.0895
96.5116
97.6744
93.2230
8338420
0.0000
ckim-vqsrINDELI16_PLUSmap_sirenhet
95.9184
95.9184
95.9184
92.9900
4724720
0.0000
ckim-vqsrINDELI1_5func_cds*
99.4505
100.0000
98.9071
47.8632
180018120
0.0000
ckim-vqsrINDELI1_5func_cdshet
98.3607
100.0000
96.7742
64.7727
5906020
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6563
770377020
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1236
92.5759
99.9541
23.6819
4302345435522
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0482
92.4350
99.9552
27.1689
4411361446422
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
78.7206
65.5340
98.5507
56.6038
1357113621
50.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
95.3668
91.8216
99.1968
76.6417
2472224721
50.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000