PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.7805 | 98.7805 | 98.7805 | 90.9542 | 162 | 2 | 162 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | * | 98.7013 | 100.0000 | 97.4359 | 53.2934 | 76 | 0 | 76 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 50.6024 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 62.7955 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2551 | 77.6765 | 99.5283 | 34.8694 | 341 | 98 | 422 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 70.5882 | 75.0000 | 66.6667 | 89.4737 | 6 | 2 | 4 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.4359 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.1583 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.6000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.2603 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.6510 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1338 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.9697 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1061 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.1338 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.1707 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.6923 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0620 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.3923 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4076 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 97.0272 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | het | 97.2973 | 100.0000 | 94.7368 | 97.4717 | 37 | 0 | 36 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | decoy | * | 80.0000 | 100.0000 | 66.6667 | 99.9631 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | decoy | het | 66.6667 | 100.0000 | 50.0000 | 99.9720 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.0842 | 545 | 1 | 545 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.0121 | 47.2505 | 99.2032 | 31.2329 | 232 | 259 | 249 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.1766 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | * | 95.0000 | 100.0000 | 90.4762 | 48.7805 | 19 | 0 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 56.5217 | 8 | 0 | 8 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.3074 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0289 | 93.6620 | 98.5185 | 45.3441 | 133 | 9 | 133 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7778 | 98.5075 | 97.0588 | 85.2495 | 66 | 1 | 66 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.9487 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.9730 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 94.5436 | 90.1493 | 99.3884 | 68.8275 | 302 | 33 | 325 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.5974 | 93.6842 | 97.5904 | 90.6846 | 89 | 6 | 81 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5817 | 91.8058 | 99.6815 | 70.4887 | 605 | 54 | 626 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4191 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2222 | 100.0000 | 94.5946 | 84.2553 | 35 | 0 | 35 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 93.9867 | 89.1496 | 99.3789 | 58.6118 | 304 | 37 | 320 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.7137 | 90.5594 | 99.2674 | 55.9677 | 259 | 27 | 271 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.1959 | 89.4737 | 99.4444 | 63.3401 | 340 | 40 | 358 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3933 | 77.5510 | 95.0000 | 75.6098 | 38 | 11 | 38 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.8394 | 80.5907 | 98.9691 | 22.4000 | 191 | 46 | 192 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.8657 | 94.0053 | 99.9057 | 45.5875 | 2117 | 135 | 2119 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.2553 | 94.7939 | 99.8479 | 50.8778 | 1311 | 72 | 1313 | 2 | 1 | 50.0000 | |