PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34801-34850 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | hetalt | 93.9394 | 93.9394 | 93.9394 | 92.4485 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | hetalt | 91.6667 | 100.0000 | 84.6154 | 95.9627 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | homalt | 98.7805 | 98.7805 | 98.7805 | 90.9940 | 162 | 2 | 162 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 96.2901 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | homalt | 88.8889 | 100.0000 | 80.0000 | 68.7500 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2837 | 98.7939 | 99.7785 | 64.4068 | 901 | 11 | 901 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4427 | 99.6296 | 99.2565 | 60.1481 | 269 | 1 | 267 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3655 | 95.4268 | 99.3846 | 34.3434 | 313 | 15 | 323 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.7492 | 96.8153 | 98.7013 | 59.0426 | 152 | 5 | 152 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.8367 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1176 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3302 | 98.8571 | 99.8079 | 61.2435 | 1038 | 12 | 1039 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4393 | 99.6255 | 99.2537 | 64.1232 | 266 | 1 | 266 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7044 | 96.5909 | 98.8439 | 91.2714 | 170 | 6 | 171 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.7660 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.4097 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3801 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.3713 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4912 | 62 | 4 | 62 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.5664 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.3333 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3628 | 97.1983 | 99.5556 | 70.8549 | 451 | 13 | 448 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 64.4372 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 83.6331 | 89 | 1 | 89 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9589 | 99.9507 | 99.9671 | 54.6457 | 6085 | 3 | 6085 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9703 | 99.9703 | 99.9703 | 36.7854 | 6743 | 2 | 6743 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4859 | 71.5686 | 97.3333 | 92.8910 | 73 | 29 | 73 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9703 | 99.9604 | 99.9802 | 50.4100 | 10098 | 4 | 10098 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5301 | 86.8778 | 98.9691 | 90.9683 | 192 | 29 | 192 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.0000 | 82.8947 | 98.4375 | 90.7581 | 126 | 26 | 126 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.0613 | 88.9493 | 99.7967 | 86.1115 | 982 | 122 | 982 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.7716 | 83.3333 | 99.6678 | 87.5130 | 600 | 120 | 600 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.8396 | 83.1683 | 97.6744 | 93.4799 | 84 | 17 | 84 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | het | 94.3861 | 89.4072 | 99.9521 | 52.4903 | 4178 | 495 | 4176 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2610 | 94.8589 | 99.7879 | 66.5958 | 941 | 51 | 941 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4040 | 81.8182 | 98.5401 | 90.7495 | 135 | 30 | 135 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.4865 | 77.4194 | 97.9592 | 90.1210 | 96 | 28 | 96 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8348 | 99.6884 | 99.9816 | 59.7111 | 10877 | 34 | 10874 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 37.0751 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |