PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
3401-3450 / 86044 show all
gduggal-snapfbSNPtimap_l125_m1_e0het
96.3921
97.2572
95.5423
70.8639
1776550117768829394
47.5271
gduggal-snapvardSNPtvmap_l250_m1_e0*
84.2656
95.6932
75.2762
90.8080
2533114252182830
3.6232
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9092
98.7644
97.0687
69.5742
2733634227419828294
35.5072
jmaeng-gatkSNP*map_l125_m2_e1*
84.7588
74.8379
97.7121
85.2730
35325118773531982755
6.6505
gduggal-snapplatSNPtimap_l150_m1_e0*
92.9132
90.4018
95.5681
83.3799
17820189217833827469
56.7110
ciseli-customSNPtvmap_l100_m1_e0homalt
89.0533
87.6147
90.5399
62.3935
792311207915827623
75.3325
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1590
96.0055
98.3406
45.9292
36388151449009827740
89.4800
anovak-vgINDELD16_PLUS*het
72.6101
70.2754
75.1054
49.0881
22209392495827601
72.6723
gduggal-snapplatSNPtimap_l100_m0_e0het
93.3645
92.7197
94.0184
82.6234
12965101812983826467
56.5375
gduggal-snapplatSNPtvmap_l100_m1_e0*
94.8170
93.1840
96.5083
77.9815
22831167022830826404
48.9104
qzeng-customSNP*map_l125_m1_e0*
83.4865
72.9742
97.5374
82.2302
330771225032716826701
84.8668
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0261
98.9285
99.1239
73.3821
93437101293346825733
88.8485
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.6332
88.2406
95.2970
51.5896
15593207816717825785
95.1515
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.6332
88.2406
95.2970
51.5896
15593207816717825785
95.1515
ciseli-customSNPtimap_l150_m1_e0homalt
86.8060
85.3282
88.3359
70.2453
625210756248825675
81.8182
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
78.0779
88.6152
69.7802
44.4557
19072451905825723
87.6364
gduggal-snapplatSNPtimap_l150_m2_e1het
93.1452
92.6854
93.6096
87.2522
1206395212085825463
56.1212
gduggal-snapplatSNPtvmap_l100_m2_e1het
94.7477
94.6794
94.8162
82.9388
1509084815090825397
48.1212
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
75.9768
87.8450
66.9339
67.8314
14962071670825122
14.7879
gduggal-snapvardSNPtvmap_l250_m1_e0het
79.6442
96.8663
67.6217
91.5354
173156172382528
3.3939
ghariani-varprowlSNPtimap_l100_m1_e0het
98.1681
99.0582
97.2939
72.4309
2966028229662825157
19.0303
egarrison-hhgaINDEL*HG002compoundhethomalt
61.2199
97.0845
44.7051
74.4521
66620667825708
85.8182
jmaeng-gatkSNP*map_l125_m2_e1het
88.5956
81.7375
96.7099
87.4772
2422754132422182452
6.3107
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
66.0268
75.3467
58.7588
41.5789
4891601174824725
87.9854
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
40.1642
32.5939
52.3148
73.3785
7201489904824648
78.6408
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.4986
91.8437
95.2143
47.2808
1020290616374823701
85.1762
gduggal-snapplatSNPtimap_l150_m2_e0het
93.1053
92.6481
93.5671
87.2010
1193494711956822460
55.9611
eyeh-varpipeINDELD16_PLUSHG002compoundhethomalt
0.4762
12.5000
0.2427
19.8444
172822821
99.8783
eyeh-varpipeINDELD16_PLUS*het
74.8225
76.6382
73.0908
51.0116
24217382230821811
98.7820
qzeng-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
91.6770
95.2628
88.3513
55.6869
1468736227821401
48.8429
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
74.9889
82.2562
68.9015
82.7699
14513131819821334
40.6821
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.8642
95.2989
94.4335
80.6105
138866851391182085
10.3659
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.8642
95.2989
94.4335
80.6105
138866851391182085
10.3659
gduggal-snapplatSNPtvmap_l100_m2_e0het
94.7121
94.6314
94.7930
82.9183
1493084714928820395
48.1707
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
jmaeng-gatkSNP*map_l125_m2_e0*
84.6294
74.6420
97.7024
85.2765
34875118483486982054
6.5854
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.2644
90.8623
95.7970
33.1527
18714188218667819734
89.6215
mlin-fermikitINDELI1_5HG002complexvar*
96.3771
95.3032
97.4754
51.5661
31796156731622819800
97.6801
jpowers-varprowlSNP*segdup*
98.1671
99.2090
97.1467
91.9113
278452222785181871
8.6797
raldana-dualsentieonSNPtv*het
99.8532
99.8447
99.8617
22.1748
59077791959070381822
2.6895
jmaeng-gatkSNP*map_l125_m2_e0het
88.4835
81.5574
96.6953
87.4762
2391154072390581751
6.2424
mlin-fermikitSNPtimap_l125_m0_e0homalt
56.8886
46.9829
72.0875
54.0574
211023812110817761
93.1457
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
58.8731
57.9621
59.8131
41.7312
11328211216817563
68.9106
ciseli-customSNPtimap_l250_m1_e0het
63.3134
59.0633
68.2225
93.3005
17531215175481720
2.4480
cchapple-customSNPtimap_l125_m1_e0*
97.0755
96.9422
97.2092
72.6876
2843889728423816227
27.8186
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.9278
97.6646
85.0604
50.5657
46421114646816787
96.4461
eyeh-varpipeSNP*HG002compoundhet*
97.2195
99.1054
95.4041
44.2893
2559123116939816176
21.5686
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392