PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34401-34450 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2973 | 97.2973 | 97.2973 | 81.9512 | 72 | 2 | 72 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 37.8378 | 21 | 0 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | * | 92.4000 | 89.3617 | 95.6522 | 92.1098 | 42 | 5 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | het | 94.7694 | 92.1875 | 97.5000 | 85.8156 | 59 | 5 | 78 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | * | 93.9335 | 93.7500 | 94.1176 | 92.9752 | 30 | 2 | 32 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | * | 95.1788 | 93.1507 | 97.2973 | 90.6210 | 68 | 5 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6014 | 91.7647 | 97.6190 | 90.6977 | 78 | 7 | 82 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | hetalt | 77.9122 | 68.6869 | 90.0000 | 81.9820 | 68 | 31 | 18 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 70.5882 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 66.6667 | 75.0000 | 60.0000 | 80.7692 | 3 | 1 | 3 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | homalt | 64.7059 | 52.3810 | 84.6154 | 75.0000 | 11 | 10 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | * | 72.7273 | 59.5745 | 93.3333 | 85.9155 | 28 | 19 | 28 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.9597 | 93.3333 | 94.5946 | 89.0208 | 56 | 4 | 35 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.6988 | 47.5728 | 96.3636 | 56.6929 | 98 | 108 | 53 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.2369 | 70.5069 | 98.6486 | 35.9307 | 153 | 64 | 146 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.9381 | 92.8839 | 99.2000 | 63.6099 | 248 | 19 | 248 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.4938 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.3651 | 69.4444 | 92.5926 | 68.9655 | 25 | 11 | 25 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6002 | 85.2941 | 96.6102 | 66.8539 | 58 | 10 | 57 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | homalt | 96.6164 | 95.5556 | 97.7011 | 77.5194 | 86 | 4 | 85 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | het | 94.1316 | 90.3614 | 98.2301 | 88.6089 | 75 | 8 | 111 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7199 | 99.5649 | 99.8753 | 57.4423 | 1602 | 7 | 1602 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 100.0000 | 80.0000 | 97.1989 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 7 | 0 | 6 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | homalt | 98.7971 | 97.9332 | 99.6764 | 93.3875 | 616 | 13 | 616 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | * | hetalt | 99.7425 | 99.8282 | 99.6569 | 53.0218 | 581 | 1 | 581 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6893 | 99.5567 | 99.8222 | 56.6808 | 1123 | 5 | 1123 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 60.0000 | 99.8457 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 94.4000 | 0 | 0 | 12 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 90.4762 | 96.7643 | 0 | 0 | 19 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 81.8182 | 96.9101 | 0 | 0 | 9 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.0721 | 0 | 0 | 24 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.4737 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 93.1034 | 97.1202 | 0 | 0 | 27 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 84.6154 | 97.5655 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |