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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
34251-34300 / 86044 show all
eyeh-varpipeSNP*map_l100_m1_e0hetalt
99.6622
100.0000
99.3266
65.7044
41029521
50.0000
eyeh-varpipeSNP*map_l100_m2_e0hetalt
99.6753
100.0000
99.3528
67.7116
42030721
50.0000
eyeh-varpipeSNP*map_l100_m2_e1hetalt
99.6805
100.0000
99.3631
67.6289
43031221
50.0000
eyeh-varpipeSNP*map_l250_m0_e0homalt
99.6776
99.6820
99.6732
93.5320
627261022
100.0000
eyeh-varpipeSNPtiHG002compoundhethetalt
99.8980
99.8273
99.9687
18.5958
5781639821
50.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
33.3333
99.9533
00120
0.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
33.3333
99.8458
00120
0.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
98.0392
100.0000
96.1538
79.7665
105022
100.0000
eyeh-varpipeSNPtimap_l250_m1_e0homalt
99.8123
99.7511
99.8737
88.1405
16034158122
100.0000
eyeh-varpipeSNPtimap_l250_m2_e0homalt
99.8276
99.7713
99.8839
88.9360
17454172122
100.0000
eyeh-varpipeSNPtimap_l250_m2_e1homalt
99.8298
99.7743
99.8854
88.9822
17684174322
100.0000
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
99.7015
100.0000
99.4048
74.4681
13033421
50.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
99.3243
100.0000
98.6577
87.6860
15014721
50.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5789
99.5842
99.5736
56.7742
479246721
50.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
99.3243
100.0000
98.6577
87.6860
15014721
50.0000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_51to200*
50.0000
100.0000
33.3333
94.5455
10120
0.0000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_51to200het
50.0000
100.0000
33.3333
92.8571
10120
0.0000
eyeh-varpipeSNPtvmap_l100_m1_e0hetalt
99.3548
100.0000
98.7179
69.3517
41015421
50.0000
eyeh-varpipeSNPtvmap_l100_m2_e0hetalt
99.3865
100.0000
98.7805
70.8703
42016221
50.0000
eyeh-varpipeSNPtvmap_l100_m2_e1hetalt
99.4012
100.0000
98.8095
70.6294
43016621
50.0000
eyeh-varpipeSNPtvmap_l250_m1_e0homalt
99.6477
99.5327
99.7630
89.0347
852484222
100.0000
eyeh-varpipeSNPtvmap_l250_m2_e0homalt
99.6784
99.5731
99.7840
89.6709
933492422
100.0000
eyeh-varpipeSNPtvmap_l250_m2_e1homalt
99.6815
99.5772
99.7861
89.7714
942493322
100.0000
gduggal-bwafbINDEL*segduphetalt
91.3096
87.6923
95.2381
96.9828
114164022
100.0000
gduggal-bwafbINDELC6_15HG002compoundhet*
0.0000
0.0000
97.5000
00020
0.0000
gduggal-bwafbINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
50.0000
100.0000
33.3333
99.1549
10120
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
98.9796
00020
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
98.8950
00020
0.0000
gduggal-bwafbINDELC6_15lowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
99.1935
00020
0.0000
gduggal-bwafbINDELD16_PLUSHG002complexvarhetalt
81.6709
72.4696
93.5484
69.6078
179682922
100.0000
gduggal-bwafbINDELD16_PLUSHG002compoundhethetalt
86.2756
76.4004
99.0826
35.1190
147345521622
100.0000
gduggal-bwafbINDELD16_PLUSfunc_cds*
72.7273
66.6667
80.0000
52.3810
84822
100.0000
gduggal-bwafbINDELD16_PLUSfunc_cdshet
75.0000
75.0000
75.0000
52.9412
62622
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
77.5015
63.7949
98.7097
42.3792
62235315322
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.6233
84.1577
98.1651
57.4219
108920510722
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
56.0000
63.6364
50.0000
66.6667
74222
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
52.5424
36.0465
96.8750
65.2174
621106222
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
71.8310
89.4737
60.0000
70.5882
172322
100.0000
gduggal-bwafbSNPtimap_l250_m1_e0homalt
98.9956
98.1332
99.8733
88.0983
157730157722
100.0000
gduggal-bwafbSNPtimap_l250_m2_e0homalt
99.0487
98.2276
99.8837
88.8268
171831171822
100.0000
gduggal-bwafbSNPtimap_l250_m2_e1homalt
99.0324
98.1941
99.8852
88.8818
174032174022
100.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6180
99.4911
99.7452
67.3461
782478320
0.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4278
99.2381
99.6183
71.9185
521452220
0.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.9415
96.3753
99.5595
86.6901
4521745222
100.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_51to200*
50.0000
100.0000
33.3333
96.5517
10120
0.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_51to200het
50.0000
100.0000
33.3333
95.5882
10120
0.0000
gduggal-bwafbSNPtvmap_l150_m0_e0homalt
99.0129
98.1928
99.8469
80.0489
130424130422
100.0000
gduggal-bwaplatINDEL*func_cds*
93.3174
87.8652
99.4911
51.1194
3915439122
100.0000
gduggal-bwaplatINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
70.5882
60.0000
85.7143
99.7433
1281221
50.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
75.2713
61.0778
98.0583
75.8782
1026510122
100.0000